Fish Single-cell RNA Database

GENE ID: ENSDARG00000037527

Symbol	Location	Gene type	Genome version	Species
si:rp71-17i16.5	23: 20357247 ~ 20363261 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000037527 (si:rp71-17i16.5), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000017757	pik3cg	4: 3343171 ~ 3353595 (-)
ENSDARG00000059855	wdr66	5: 41774366 ~ 41792672 (+)
ENSDARG00000067713	snx18a	5: 40272848 ~ 40292299 (-)
ENSDARG00000038011	cyth4a	3: 29487300 ~ 29508959 (-)
ENSDARG00000005159	cyth1a	3: 56408840 ~ 56541751 (-)
ENSDARG00000076742	cyth1a	3: 57462228 ~ 57530323 (-)
ENSDARG00000102762	pik3r5	6: 19933763 ~ 19979961 (+)
ENSDARG00000103984	cyth4b	6: 392815 ~ 409768 (+)
ENSDARG00000068397	tns2b	6: 39011703 ~ 39051319 (-)
ENSDARG00000074283	inpp5d	6: 28140816 ~ 28192192 (+)
ENSDARG00000019278	NA	2: 5300405 ~ 5311253 (+)
ENSDARG00000096661	si:ch211-286b5.5	1: 55264025 ~ 55270966 (-)
ENSDARG00000024740	gng13a	1: 9227081 ~ 9228007 (-)
ENSDARG00000060753	pear1	16: 30438041 ~ 30520157 (+)
ENSDARG00000004358	gnb3a	16: 12022543 ~ 12049762 (+)
ENSDARG00000095654	tns3.1	20: 6543674 ~ 6576809 (+)
ENSDARG00000031911	tns3.2	20: 6590220 ~ 6666641 (+)
ENSDARG00000060609	cd109	20: 49119633 ~ 49175503 (+)
ENSDARG00000029894	slc2a15a	13: 28417297 ~ 28442086 (+)
ENSDARG00000055377	gnb5b	18: 39067575 ~ 39105519 (+)
ENSDARG00000021488	cyth1b	12: 34051434 ~ 34192955 (+)
ENSDARG00000007807	cyth3a	12: 17504559 ~ 17562703 (+)
ENSDARG00000002696	gnb3b	19: 5106226 ~ 5135345 (-)
ENSDARG00000069603	taok1a	15: 25588357 ~ 25629046 (-)
ENSDARG00000037527	si:rp71-17i16.5	23: 20357247 ~ 20363261 (-)
ENSDARG00000077875	slc2a5	23: 22616063 ~ 22633136 (+)
ENSDARG00000076292	tns2a	23: 10469955 ~ 10587257 (+)
ENSDARG00000115383	gnb4b	11: 44226200 ~ 44447359 (+)
ENSDARG00000098683	zmiz2	10: 45248326 ~ 45341821 (+)
ENSDARG00000044246	snx18b	10: 9092815 ~ 9097996 (+)
ENSDARG00000005560	ywhah	10: 17166035 ~ 17170086 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	Immune cells (cluster: 20)	potential marker	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE123241 (fgf3 siblings)	neuromast	regeneration	5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000037527

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences