Fish Single-cell RNA Database

GENE ID: ENSDARG00000029894

Symbol	Location	Gene type	Genome version	Species
slc2a15a	13: 28417297 ~ 28442086 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000029894 (slc2a15a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000036427	slc3a2a	7: 20524064 ~ 20530447 (+)
ENSDARG00000093957	si:dkey-251i10.2	5: 67463027 ~ 67471375 (-)
ENSDARG00000005320	nipsnap1	5: 12032802 ~ 12063381 (-)
ENSDARG00000007080	rhcgl1	6: 36381709 ~ 36391687 (+)
ENSDARG00000079361	abcg2b	1: 8673061 ~ 8691969 (-)
ENSDARG00000016818	abcg2d	1: 50566256 ~ 50590626 (-)
ENSDARG00000092240	si:ch211-243a20.3	1: 45351890 ~ 45366422 (+)
ENSDARG00000075264	NA	9: 23859317 ~ 23885220 (-)
ENSDARG00000041998	zgc:113337	9: 9322424 ~ 9348058 (-)
ENSDARG00000071049	si:dkey-119m7.4	20: 305035 ~ 318532 (+)
ENSDARG00000095807	hp	8: 50143194 ~ 50147948 (-)
ENSDARG00000038969	zgc:113142	17: 51627209 ~ 51638206 (+)
ENSDARG00000029894	slc2a15a	13: 28417297 ~ 28442086 (+)
ENSDARG00000033551	fbxw4	13: 28512530 ~ 28572642 (+)
ENSDARG00000058574	abcg2c	13: 5031197 ~ 5065539 (-)
ENSDARG00000018726	slco3a1	18: 25073984 ~ 25177230 (-)
ENSDARG00000052497	zgc:110789	18: 12034985 ~ 12052132 (-)
ENSDARG00000054690	si:dkey-166k12.1	19: 42469058 ~ 42485064 (+)
ENSDARG00000039999	slc13a5b	15: 26573676 ~ 26593684 (+)
ENSDARG00000100075	abcg2a	23: 45906137 ~ 45936357 (+)
ENSDARG00000037527	si:rp71-17i16.5	23: 20357247 ~ 20363261 (-)
ENSDARG00000034975	gpr157	23: 22597624 ~ 22605915 (+)
ENSDARG00000056499	ca6	23: 22634442 ~ 22650992 (-)
ENSDARG00000036864	slc34a2b	23: 1078072 ~ 1104995 (+)
ENSDARG00000094112	slc22a21	21: 45904956 ~ 45922066 (+)
ENSDARG00000013430	bhmt	21: 40408 ~ 45920 (-)
ENSDARG00000056028	slc22a7a	11: 30729745 ~ 30742966 (+)
ENSDARG00000052330	slc4a2b	24: 33301129 ~ 33366188 (-)
ENSDARG00000059166	slc22a13b	24: 20006711 ~ 20016817 (-)
ENSDARG00000103220	slc10a3	25: 37443194 ~ 37445449 (+)
ENSDARG00000045638	slc13a1	25: 27923846 ~ 27932723 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	Pigment cells (cluster: 17)	potential marker	NA
PRJNA706197 (24hpf)	embryo	baseline	24hpf, FACS sorted sox10:nEOS cells	Neural crest (cluster: 3)	potential marker	NA
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment	Pigment cell (neural crest derived) (cluster: 13)	potential marker	NA
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells	Xanthoblast (cluster: 3)	potential marker	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Xanthophores (cluster: 33)	potential marker	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000029894

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences