Fish Single-cell RNA Database

GENE ID: ENSDARG00000045638

Symbol	Location	Gene type	Genome version	Species
slc13a1	25: 27923846 ~ 27932723 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000045638 (slc13a1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045863	asb15b	4: 4120570 ~ 4129187 (-)
ENSDARG00000003615	slc26a3.2	4: 18804317 ~ 18823032 (+)
ENSDARG00000038359	enosf1	7: 57108823 ~ 57134010 (+)
ENSDARG00000007080	rhcgl1	6: 36381709 ~ 36391687 (+)
ENSDARG00000053961	slc2a11a	6: 40975655 ~ 40992683 (-)
ENSDARG00000056551	slc22a13a	2: 23731194 ~ 23745290 (+)
ENSDARG00000012903	slc34a2a	1: 14432434 ~ 14442902 (+)
ENSDARG00000037861	slc2a3b	16: 12474861 ~ 12496632 (-)
ENSDARG00000005867	gon4l	16: 28994709 ~ 29024769 (+)
ENSDARG00000020114	slc20a1a	8: 31057115 ~ 31075015 (-)
ENSDARG00000060796	slc20a2	8: 29770098 ~ 29851706 (-)
ENSDARG00000011618	slc26a2	14: 25438015 ~ 25452503 (-)
ENSDARG00000029894	slc2a15a	13: 28417297 ~ 28442086 (+)
ENSDARG00000101289	slc29a1a	13: 46830736 ~ 46917098 (-)
ENSDARG00000060879	slc28a1	18: 26829086 ~ 26850069 (+)
ENSDARG00000053525	enpp7.2	12: 32423375 ~ 32426685 (-)
ENSDARG00000036865	slc2a12	23: 31608259 ~ 31633310 (-)
ENSDARG00000036864	slc34a2b	23: 1078072 ~ 1104995 (+)
ENSDARG00000055523	slc22a6l	21: 28478663 ~ 28494322 (+)
ENSDARG00000029832	slc26a1	21: 20324562 ~ 20329541 (-)
ENSDARG00000070214	slc41a1	11: 37948839 ~ 37997419 (-)
ENSDARG00000054447	slc29a1b	11: 43419809 ~ 43458612 (+)
ENSDARG00000062873	slc2a11l	10: 17485945 ~ 17501528 (-)
ENSDARG00000010641	slc20a1b	10: 17713022 ~ 17728165 (+)
ENSDARG00000052330	slc4a2b	24: 33301129 ~ 33366188 (-)
ENSDARG00000059166	slc22a13b	24: 20006711 ~ 20016817 (-)
ENSDARG00000015749	hps3	22: 38202614 ~ 38224321 (-)
ENSDARG00000045633	asb15a	25: 27822188 ~ 27843066 (-)
ENSDARG00000061899	iqub	25: 27873671 ~ 27912373 (+)
ENSDARG00000045638	slc13a1	25: 27923846 ~ 27932723 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	NA	NA	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	NA	NA	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment	NA	NA	NA
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment	NA	NA	NA
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells	NA	NA	NA
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	NA	NA	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	NA	NA	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae	NA	NA	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	NA	NA	NA
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000045638

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences