Fish Single-cell RNA Database

GENE ID: ENSDARG00000078645

Symbol	Location	Gene type	Genome version	Species
si:ch73-62l21.1	21: 13353263 ~ 13376867 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000078645 (si:ch73-62l21.1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000074905	camk1da	4: 7888047 ~ 7983016 (+)
ENSDARG00000005372	camk4	5: 55763276 ~ 55848511 (-)
ENSDARG00000060596	prkaa1	5: 33238545 ~ 33255759 (-)
ENSDARG00000015922	stk17al	3: 16841942 ~ 16872909 (+)
ENSDARG00000003818	prkag1	6: 2206495 ~ 2222707 (-)
ENSDARG00000027963	camkva	6: 42545797 ~ 42598328 (+)
ENSDARG00000060116	camk1a	6: 46353910 ~ 46403475 (-)
ENSDARG00000001933	prkag2b	2: 13056802 ~ 13148453 (+)
ENSDARG00000046074	stk11	2: 59041081 ~ 59063573 (+)
ENSDARG00000017537	prkag3a	1: 6171585 ~ 6185532 (+)
ENSDARG00000014348	stk17b	9: 24192370 ~ 24201159 (+)
ENSDARG00000000369	prkag3b	9: 14090329 ~ 14108896 (-)
ENSDARG00000060641	prkaa2	20: 8028613 ~ 8067973 (+)
ENSDARG00000046143	prkab1b	8: 39674707 ~ 39703689 (+)
ENSDARG00000043648	pnck	8: 9149436 ~ 9167115 (+)
ENSDARG00000021811	calm1a	17: 26713111 ~ 26721007 (-)
ENSDARG00000056713	pskh1	18: 21728194 ~ 21748966 (-)
ENSDARG00000034210	si:dkey-240h12.4	19: 11167289 ~ 11208824 (-)
ENSDARG00000008788	camk1gb	23: 39558508 ~ 39597901 (+)
ENSDARG00000057000	camkvl	23: 20563779 ~ 20636740 (+)
ENSDARG00000078645	si:ch73-62l21.1	21: 13353263 ~ 13376867 (+)
ENSDARG00000005141	camkvb	11: 35364445 ~ 35441348 (+)
ENSDARG00000029474	camk1b	11: 4026229 ~ 4132662 (+)
ENSDARG00000078504	si:ch73-60h1.1	11: 14676236 ~ 14751380 (+)
ENSDARG00000044183	prkab1a	10: 17936441 ~ 17946163 (+)
ENSDARG00000018856	dclk1a	10: 34737322 ~ 34871737 (-)
ENSDARG00000012625	prkag2a	24: 28252520 ~ 28381437 (-)
ENSDARG00000074715	stk17a	24: 744713 ~ 788777 (+)
ENSDARG00000044526	camk1ga	22: 1049367 ~ 1069407 (+)
ENSDARG00000017446	camk1db	25: 7987920 ~ 8030425 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Chondrocranium cells (cluster: 8)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (D_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro individual culture
PRJNA641144 (P_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo primary tumors
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
PRJNA641144 (C_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro co-culture
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000078645

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences