Fish Single-cell RNA Database

GENE ID: ENSDARG00000100115

Symbol	Location	Gene type	Genome version	Species
dnah1	11: 34633392 ~ 34720630 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000100115 (dnah1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000019743	dctn1a	7: 1062972 ~ 1108935 (-)
ENSDARG00000078722	clip1a	5: 67188245 ~ 67241633 (-)
ENSDARG00000059596	clip2	5: 59392183 ~ 59480161 (+)
ENSDARG00000028899	tekt4	1: 54613757 ~ 54622227 (-)
ENSDARG00000062606	si:dkey-26i13.8	1: 11711226 ~ 11733130 (+)
ENSDARG00000000606	dnah6	1: 22002649 ~ 22235421 (+)
ENSDARG00000060165	dnah7	9: 24951129 ~ 25055722 (-)
ENSDARG00000101989	thrap3a	16: 35870456 ~ 35901707 (+)
ENSDARG00000041363	dctn3	16: 5145132 ~ 5154032 (-)
ENSDARG00000002213	invs	16: 27442549 ~ 27502702 (+)
ENSDARG00000099631	cmtm6	16: 41467188 ~ 41488023 (-)
ENSDARG00000007737	zyg11	20: 16170848 ~ 16212016 (+)
ENSDARG00000022660	armc2	20: 32228210 ~ 32270866 (-)
ENSDARG00000021997	cfap206	20: 2648405 ~ 2667902 (-)
ENSDARG00000021115	spata6	8: 15287424 ~ 15305528 (-)
ENSDARG00000090319	rnf212	14: 17397534 ~ 17416730 (+)
ENSDARG00000056753	dctn1b	13: 11581942 ~ 11667661 (-)
ENSDARG00000001825	cfap43	13: 24717880 ~ 24743151 (+)
ENSDARG00000045038	tekt3	12: 37327867 ~ 37343858 (-)
ENSDARG00000053026	kif19	12: 38770654 ~ 38805710 (+)
ENSDARG00000103383	dnah9	12: 137149 ~ 145076 (-)
ENSDARG00000098228	thrap3b	19: 3865210 ~ 3886991 (-)
ENSDARG00000038788	dnai1.2	21: 17956024 ~ 17982845 (+)
ENSDARG00000026595	pafah1b1b	21: 39423974 ~ 39454192 (+)
ENSDARG00000100115	dnah1	11: 34633392 ~ 34720630 (-)
ENSDARG00000098929	tex15	10: 7585928 ~ 7588878 (+)
ENSDARG00000079483	CABZ01072096.1	10: 44408675 ~ 44411032 (-)
ENSDARG00000068468	dnah3	24: 39443874 ~ 39511864 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	Neuronal progenitor (cluster: 16)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000100115

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences