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| Symbol | Location | Gene type | Genome version | Species |
|---|---|---|---|---|
| si:ch211-193l2.10 | 11: 42101661 ~ 42106310 (-) | protein_coding | GRCz11 | Danio rerio |
: marker.| Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
|---|---|---|---|---|---|---|---|
| GSE158142 (3dpf) | head | baseline | 3dpf, untreatment |
Otic vesicle (cluster: 17) |
potential marker |
NA |
|
| GSE123241 (wild type) | neuromast | baseline | 5dpf, wild type during sensory hair cell regeneration, lateral line sensory |
Hair cells (cluster: 7) |
potential marker |
NA |
|
| GSE123241 (fgf3 mutants) | neuromast | regeneration | 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory |
Hair cells (cluster: 6) |
potential marker |
NA |
|
| GSE123241 (fgf3 siblings) | neuromast | regeneration | 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory |
Hair cells (cluster: 6) |
potential marker |
NA |
|
| GSE158099 (WT) | whole body | baseline | 2.5dpf, cd41:GFPlow-WT |
Epidermal cells (cluster: 12) |
potential marker |
NA |
|
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 2.5dpf, cd41:GFPlow-runx1-/- |
Epidermal cells (cluster: 7) |
potential marker |
NA |
|
| GSE158142 (15dpf) | brain, eye | baseline | 15dpf, untreatment | ||||
| GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment | ||||
| GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment | ||||
| GSE106587 (MZoep mutant) | embryo | baseline | 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo | ||||
| PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development | ||||
| GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos | ||||
| GSE126647 (control) | embryo | baseline | 1.17dpf, control nkx2.5:ZsYellow+ cells | ||||
| GSE126647 (Pbx4-depleted) | embryo | growth | 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells | ||||
| GSE161712 (M. marinum) | granulomas | disease | adult, infected with bacteria of M. marinum | ||||
| GSE158142 (24hpf) | head | baseline | 24hpf, untreatment | ||||
| GSE158142 (16hpf) | head | baseline | 16hpf, 14 somites, untreatment | ||||
| GSE158142 (1.5dpf) | head | baseline | 1.5dpf, untreatment | ||||
| GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment | ||||
| GSE158142 (12hpf) | head | baseline | 12hpf, 6 somites, untreatment | ||||
| GSE158142 (2dpf) | head | baseline | 2dpf, untreatment | ||||
| GSE158142 (20hpf) | head | baseline | 20hpf, 21-22 somites, untreatment | ||||
| GSE158142 (14hpf) | head | baseline | 14hpf, 10 somites, untreatment | ||||
| PRJNA415636 (pancreas, liver) | hepatopancreas | baseline | adult, Zebrabow M, pancreas and liver | ||||
| GSE150498 (untreated ctrl) | intestine | baseline | 6dpf, untreated ctrl | ||||
| GSE150498 (DSS treated) | intestine | disease | 6dpf, DSS treated | ||||
| PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae | ||||
| PRJNA605021 (hair cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae | ||||
| GSE148591 (6mpf) | pituitary | baseline | 6mpf, male, Sox17:CreERT2 | ||||
| GSE148591 (3mpf) | pituitary | transplant | 3mpf, graft transplantation during early embryogenesis | ||||
| PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet | ||||
| GSE122680 (24hpf) | retina | baseline | 24hpf, WT, untreatment | ||||
| GSE175929 (5mpf) | retina | baseline | 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg | ||||
| GSE122680 (1.5dpf) | retina | baseline | 1.5dpf, WT, untreatment | ||||
| GSE122680 (14dpf) | retina | baseline | 14dpf, WT, untreatment | ||||
| PRJNA551501 (2mpf) | thyroid gland | baseline | 2mpf, Tg(tg:mVenus-T2A-NTR) | ||||
| GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment | ||||
| GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 6dpf, cd41:GFPlow-runx1-/- | ||||
| GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 10dpf, cd41:GFPlow-runx1-/- | ||||
| GSE158099 (WT) | whole body | baseline | 16dpf, cd41:GFPlow-WT |