Fish Single-cell RNA Database

GENE ID: ENSDARG00000068923

Symbol	Location	Gene type	Genome version	Species
umodl1	10: 32613706 ~ 32639941 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000068923 (umodl1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000070605	b4galnt2.2	3: 23045214 ~ 23060121 (+)
ENSDARG00000092758	caiap	20: 15560141 ~ 15564489 (+)
ENSDARG00000094519	si:ch211-152p23.2	8: 41413919 ~ 41440689 (+)
ENSDARG00000087784	si:dkeyp-110a12.4	17: 7595356 ~ 7617558 (+)
ENSDARG00000092721	si:ch211-67f24.7	13: 36633355 ~ 36638969 (+)
ENSDARG00000094862	olfcv2	18: 33264609 ~ 33275912 (+)
ENSDARG00000040632	olfcu1	18: 33333411 ~ 33337703 (-)
ENSDARG00000029635	olfcq13	18: 33570170 ~ 33577224 (+)
ENSDARG00000074150	si:ch211-226h7.5	12: 46231498 ~ 46252062 (-)
ENSDARG00000095409	si:ch211-226h7.8	12: 46152983 ~ 46176115 (-)
ENSDARG00000076196	si:ch211-226h7.6	12: 46209859 ~ 46228023 (-)
ENSDARG00000052779	zgc:153932	12: 46120836 ~ 46145909 (-)
ENSDARG00000097826	si:dkey-239b22.2	12: 39034225 ~ 39061186 (+)
ENSDARG00000105833	or126-3	15: 5182854 ~ 5184186 (-)
ENSDARG00000105721	or128-6	15: 5210468 ~ 5212930 (-)
ENSDARG00000058762	or128-3	15: 5228580 ~ 5230423 (-)
ENSDARG00000054720	or118-1	15: 31311716 ~ 31313932 (-)
ENSDARG00000054719	or118-3	15: 31317358 ~ 31319276 (-)
ENSDARG00000094067	si:dkey-121n8.7	15: 41349268 ~ 41390410 (-)
ENSDARG00000088601	si:dkey-175m17.6	21: 27297145 ~ 27299345 (+)
ENSDARG00000044748	or115-12	21: 40225915 ~ 40227326 (+)
ENSDARG00000092406	or115-8	21: 40254429 ~ 40256146 (+)
ENSDARG00000053779	si:ch211-218m3.13	21: 40276569 ~ 40279077 (+)
ENSDARG00000022319	or115-5	21: 40287100 ~ 40289652 (+)
ENSDARG00000044336	si:ch211-218m3.16	21: 40292801 ~ 40296052 (+)
ENSDARG00000043142	or108-3	10: 36178713 ~ 36180091 (+)
ENSDARG00000068923	umodl1	10: 32613706 ~ 32639941 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	Microvillus olfactory sensory neuron (cluster: 8)	potential marker	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	Microvillus olfactory sensory neuron (cluster: 5)	potential marker	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	Microvillus olfactory sensory neuron (cluster: 3)	potential marker	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000068923

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences