Fish Single-cell RNA Database

GENE ID: ENSDARG00000039164

Symbol	Location	Gene type	Genome version	Species
mhc1uma	22: 3910610 ~ 3914222 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000039164 (mhc1uma), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000053136	b2m	4: 12785964 ~ 12795489 (-)
ENSDARG00000087863	cd44a	7: 49882750 ~ 49892991 (-)
ENSDARG00000091495	si:dkey-83f18.11	7: 4499264 ~ 4501006 (+)
ENSDARG00000089067	si:dkey-83f18.5	7: 4642009 ~ 4645601 (+)
ENSDARG00000095481	si:ch211-282j17.10	7: 4718378 ~ 4913250 (+)
ENSDARG00000043767	si:ch211-282j17.3	7: 3654800 ~ 3657284 (-)
ENSDARG00000077260	si:dkey-28d5.13	7: 4931366 ~ 4933943 (+)
ENSDARG00000077395	si:dkey-81n2.2	7: 4971938 ~ 4973922 (+)
ENSDARG00000041389	si:dkey-81n2.1	7: 4987530 ~ 4990000 (+)
ENSDARG00000042752	si:ch211-282j17.11	7: 3755739 ~ 3762912 (-)
ENSDARG00000095326	si:dkey-88n24.3	7: 3878593 ~ 3884424 (-)
ENSDARG00000045999	saa	7: 12950507 ~ 12956434 (+)
ENSDARG00000056200	abcb9	5: 28018246 ~ 28029558 (-)
ENSDARG00000095634	si:ch211-66k16.2	2: 45454415 ~ 45456892 (+)
ENSDARG00000088023	si:dkey-26c10.5	16: 12281032 ~ 12294468 (+)
ENSDARG00000015887	b2ml	8: 50942240 ~ 50950549 (+)
ENSDARG00000016056	mhc1laa	8: 44442220 ~ 44448423 (+)
ENSDARG00000079105	mhc2dab	8: 36466771 ~ 36469117 (-)
ENSDARG00000076290	calr	8: 16582339 ~ 16592491 (-)
ENSDARG00000016227	mhc1lba	8: 44462599 ~ 44463985 (-)
ENSDARG00000033446	tap2t	12: 26546820 ~ 26559650 (-)
ENSDARG00000079402	tapbp.1	19: 7038694 ~ 7043355 (-)
ENSDARG00000045011	tapbp.2	19: 7065988 ~ 7070691 (-)
ENSDARG00000089758	si:dkey-11o15.7	21: 15346363 ~ 15361218 (+)
ENSDARG00000074851	s1pr4	22: 5320415 ~ 5323482 (-)
ENSDARG00000039164	mhc1uma	22: 3910610 ~ 3914222 (-)
ENSDARG00000051711	CR339041.2	25: 10929790 ~ 10935577 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	NA	NA	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	NA	NA	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment	NA	NA	NA
GSE158142 (24hpf)	head	baseline	24hpf, untreatment	NA	NA	NA
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment	NA	NA	NA
GSE158142 (2dpf)	head	baseline	2dpf, untreatment	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
GSE123241 (fgf3 siblings)	neuromast	regeneration	5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae	NA	NA	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000039164

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences