Fish Single-cell RNA Database

GENE ID: ENSDARG00000045644

Symbol	Location	Gene type	Genome version	Species
ca12	25: 26798673 ~ 26810914 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000045644 (ca12), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000032319	mest	4: 15996234 ~ 16001215 (-)
ENSDARG00000103736	gramd2aa	7: 53541173 ~ 53626724 (+)
ENSDARG00000013730	slc4a4a	5: 45746457 ~ 45877387 (-)
ENSDARG00000060915	fbxl16	3: 28634467 ~ 28665291 (-)
ENSDARG00000063257	si:ch211-194e18.2	6: 6390471 ~ 6448519 (-)
ENSDARG00000006546	ak4	6: 31350101 ~ 31364551 (-)
ENSDARG00000103277	cyp24a1	6: 55852274 ~ 55864687 (-)
ENSDARG00000022303	higd1a	2: 2168547 ~ 2175629 (+)
ENSDARG00000032866	erh	20: 33493924 ~ 33497128 (-)
ENSDARG00000073814	pax1b	20: 48694056 ~ 48701593 (-)
ENSDARG00000037476	sorbs3	8: 38318357 ~ 38406868 (-)
ENSDARG00000070794	greb1	17: 30369107 ~ 30418016 (+)
ENSDARG00000071353	NA	14: 46074311 ~ 46113404 (-)
ENSDARG00000025320	col21a1	13: 1799003 ~ 1866711 (+)
ENSDARG00000015399	foxf1	18: 30847237 ~ 30850365 (+)
ENSDARG00000093628	s100a11	19: 7567763 ~ 7570475 (+)
ENSDARG00000061723	tmem64	19: 31532043 ~ 31553518 (+)
ENSDARG00000004363	lhfpl6	10: 31938796 ~ 32041846 (+)
ENSDARG00000060688	trim69	10: 40836378 ~ 40851677 (+)
ENSDARG00000042285	atp8b3	22: 20473229 ~ 20515347 (-)
ENSDARG00000045644	ca12	25: 26798673 ~ 26810914 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	NA	NA	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000045644

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences