Fish Single-cell RNA Database

GENE ID: ENSDARG00000088356

Symbol	Location	Gene type	Genome version	Species
tmem117	25: 710139 ~ 752158 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000088356 (tmem117), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045691	zcrb1	4: 13923927 ~ 13931508 (-)
ENSDARG00000045692	pphln1	4: 13901458 ~ 13963440 (+)
ENSDARG00000022550	gxylt1b	4: 13892773 ~ 13902188 (-)
ENSDARG00000069780	pus7l	4: 14188327 ~ 14192254 (-)
ENSDARG00000011661	twf1b	4: 14193080 ~ 14207471 (-)
ENSDARG00000087867	NA	4: 75200467 ~ 75270523 (+)
ENSDARG00000070866	tmem11	3: 15828426 ~ 15836140 (+)
ENSDARG00000098105	tmem106c	3: 1323732 ~ 1339220 (-)
ENSDARG00000075108	tmco3	1: 218524 ~ 225137 (+)
ENSDARG00000052833	zfand3	13: 44702196 ~ 44759100 (-)
ENSDARG00000026500	xkr9	24: 14202327 ~ 14212521 (-)
ENSDARG00000076899	slc2a13b	25: 35663933 ~ 35681418 (+)
ENSDARG00000097208	NA	25: 30298377 ~ 30299662 (+)
ENSDARG00000115712	twf1a	25: 753364 ~ 764853 (+)
ENSDARG00000088356	tmem117	25: 710139 ~ 752158 (-)
ENSDARG00000076111	CABZ01072254.1	25: 265360 ~ 269284 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	NA	NA	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment	NA	NA	NA
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000088356

EXPRESSION

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