Fish Single-cell RNA Database

GENE ID: --

Symbol	Location	Gene type	Genome version	Species
tcerg1l	--	--	--	Danio rerio

PPI (protein-protein interaction) results are shown above.

Green is -- (tcerg1l), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000069160	tafa5a	4: 27251865 ~ 27398414 (-)
ENSDARG00000042656	nrn1b	2: 20991985 ~ 20994126 (-)
ENSDARG00000059826	crtac1a	1: 54934522 ~ 54947592 (-)
ENSDARG00000023003	ccdc12	16: 16529748 ~ 16554130 (+)
ENSDARG00000024564	sccpdhb	20: 34967410 ~ 34985555 (-)
ENSDARG00000053133	b3gnt7l	8: 22289320 ~ 22290886 (+)
ENSDARG00000075053	sccpdha.2	17: 12138715 ~ 12156014 (+)
ENSDARG00000075766	sccpdha.1	17: 12159529 ~ 12175772 (+)
ENSDARG00000016775	aqr	17: 51020114 ~ 51121525 (-)
ENSDARG00000037570	polr1d	14: 9077314 ~ 9085349 (-)
ENSDARG00000102517	crtac1b	13: 40064481 ~ 40141630 (-)
ENSDARG00000103490	dpysl4	12: 41580783 ~ 41619257 (-)
ENSDARG00000023160	snrnp40	19: 43004408 ~ 43016395 (+)
ENSDARG00000074244	arhgef10lb	23: 21544227 ~ 21631054 (+)
ENSDARG00000006666	bud13	21: 22697059 ~ 22705347 (+)
ENSDARG00000044380	rbmx2	21: 38638979 ~ 38647743 (+)
ENSDARG00000099458	ddx46	21: 45717930 ~ 45732177 (+)
ENSDARG00000088630	arhgef10la	11: 29331142 ~ 29563437 (-)
ENSDARG00000013005	opcml	10: 30617826 ~ 30785501 (-)
ENSDARG00000045608	tafa5b	25: 29911977 ~ 29988352 (-)
--	tcerg1l	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-	Multipotent cells (cluster: 3)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Neutrophils (cluster: 3)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Multipotent cells (cluster: 3) Multipotent cells (cluster: 7)	potential marker potential marker	NA NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: --

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences