G240180


Basic Information

Item Value
gene id G240180
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 5331931 ~ 5332435 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU272525
AATGGCGTTCCTTCTCTGATGACGTCAGTTTGACGGCTTGGGTTGAAAACGCGTAAACCACTTCCCTCCAACCGTTAGCAAAGACTATAGAAATAACACAAGACATGTCACTCGTATTGTTTTGAATGGGAGAAAGTGTAACGCTCAATATGGCGGAATAAGTCCCGCCTTCAAAATAAGAGCCAATCGCCGACCTGTAAAGTCATCGCGTCACTGCAGCGGCCGTTAGAAGCACCGGTTTCTATAGAAACAGTCAGACGCGCGCCTCCGAAATGAGGCACAAGAGACGCGCATTTAGGTCTGCGCATGCGCATTAGCTTGATCCAGCCTAAATACTGTTTTTTTTGTCATGATTTGAGCGTTTGGGAAAAAAATGTATGAGACAGTTGTTGTCAGATTTCATTGGTGATTTCAAATATGAAATTTAATCGAAAGCTTGGCAAACAGCTTTGGAGAATTTGATGTTTCCCCATTCAAAGAGATAGGAGCTGCATGATGCCCAGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU272525 True 505 lncRNA 0.44 1 5331931 5332435

Neighbor

gene id symbol gene type direction distance location
CI01000055_05263543_05300250 TMTC3 coding upstream 31282 5263247 ~ 5300649 (+)
CI01000055_05216403_05221104 NA coding upstream 110761 5216200 ~ 5221170 (+)
CI01000055_05212820_05215358 BORCS5 coding upstream 115788 5211471 ~ 5216143 (+)
CI01000055_05183333_05195895 BTBD10B, BTBD10, BTBD10A coding upstream 135361 5183333 ~ 5196570 (+)
CI01000055_05176060_05176484 NA coding upstream 155298 5175772 ~ 5176633 (+)
CI01000055_05517350_05524400 NA coding downstream 184915 5517350 ~ 5524620 (+)
CI01000055_05565166_05572215 TES coding downstream 232731 5565166 ~ 5572457 (+)
CI01000055_05608414_05611862 CAV2 coding downstream 275071 5607506 ~ 5613775 (+)
CI01000055_05614889_05616453 NA coding downstream 281630 5614065 ~ 5617591 (+)
CI01000055_05630944_05688603 MET coding downstream 298509 5630944 ~ 5688603 (+)
G240179 NA non-coding upstream 3293 5328425 ~ 5328638 (+)
G240178 NA non-coding upstream 3708 5327928 ~ 5328223 (+)
G240177 NA non-coding upstream 4227 5327384 ~ 5327704 (+)
G240176 NA non-coding upstream 4801 5326453 ~ 5327130 (+)
G240171 NA non-coding upstream 14436 5317286 ~ 5317495 (+)
G240181 NA non-coding downstream 121 5332556 ~ 5332865 (+)
G240182 NA non-coding downstream 1070 5333505 ~ 5333744 (+)
G240183 NA non-coding downstream 11130 5343565 ~ 5344986 (+)
G240188 NA non-coding downstream 29426 5361861 ~ 5362108 (+)
G240199 NA non-coding downstream 79072 5411507 ~ 5411741 (+)
CI01000055_05163240_05166231 PIGY, PYURF other upstream 165284 5162990 ~ 5166647 (+)
CI01000055_04265119_04272728 NA other upstream 1059216 4265119 ~ 4273913 (+)
G239755 NA other upstream 1076839 4254210 ~ 4255092 (+)
G239761 NA other upstream 1118529 4162250 ~ 4213402 (+)
CI01000055_02542526_02542861 NA other upstream 2787813 2542216 ~ 2544118 (+)
G240099 NA other downstream 204083 5525472 ~ 5544153 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other downstream 754390 6087034 ~ 6088759 (+)
G240344 NA other downstream 831425 6163860 ~ 6164011 (+)
CI01000055_06310117_06334586 GRAMD4B, GRAMD4 other downstream 1001889 6310117 ~ 6334801 (+)

Expression


Co-expression Network