CI01000055_05630944_05688603 (MET)


Basic Information

Item Value
gene id CI01000055_05630944_05688603
gene name MET
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 5630944 ~ 5688603 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_05630944_05688603.mRNA
ATGAGAATTCACTATTCTGAAGCCACTTGCATCCTCATCATCCTTCAAACGCTGTGGTGGGGCTTGAATAGTCAATGTGAGGAACCAATTGAAAGCTCCAAACTCGACCTCTCGGTGACCTATGACCTTCCTCACTTTGTGTCTGACACTCCCATCCAGAAGCTGTTGGAATACAATGGAACTGTGTACGTAGGTGCCGTCAATAAGCTTTATGCTCTATCAAAAGACCTCAAGCAGATACATGAGTATTATACCGGACCGGTCTCCGAGGGTCCAGATTGCTCGGTGCCAAAACCATGCTTTGTTTGCGAAGACAAGCCCACCAACACAAACAACACCAATATGGCCCTGGTGATGGAGACGTTCTACGACCTTGAGCTCTTCAGCTGTGGTTCGGTTGGGAACGGTGTCTGCACCCGTTACCTGTTAGAGGACGGACCCCTGGATACGGATGTAACTTGCATGTATTCGGAGAAAAACAAAGGCAGCAGCCACGGTTGCCCAGACTGCCTAGCAGGACCCTCAGGCACGCAGATCCTCAACGTGATGAGCAGCGGTGTTGTGAGGTTCTTCGTAGCCAATTCTGAGCCTCTTGATATGACCGGCCCGCGTCTCCACCACACCATCTCCGTCAGGAAGATGCGAGAGACTCAAGATGGCTTTGAGTTCTTTTCCGAGCAATCCTACATGGACTTGGCCCCAGGGCTGCGTGGGAACTACCCGCTACGCTACGTCTACTCCTTCCAGAGTGGTCCATATGCTTATTTTCTCACCGTCCAACGAGAAGGTGGAGGCTCAAATGCCTTCCACACGAGGATCGTACGCATGTGCTCTTCGGATCCTGAGATCCTGCGCTATGTAGAAATGCCCTTTGAGTGCATTTACTCTGAGCGAAGAAGGAAGAAGCGCTCGGCCCAGGTGGTTTTCAATGTTCTCCAGGCTGCACATGTGGCCAAAGTCGGCTATGACTTTCAGCAGGAGATGGGCCTGAAAGAAGGAGAGGACGTGCTGTTTGCTGCCTTTGCCCGCAGCAAACCTGACTCACCGGAGCCCACCGCCAGCTCTGCCGTTTGCCTTATCTCCATTACGGACATCAATAACTTCTTCAGGGATTTCATTCAGAAGGGATACACGAGGAAGCTCTATCACTTTCCAGGGTCAGAAGAGAAAACCTTCAACCAGAGTTTTGCAGGAGATTCCTTCAGCTGTGGGAAACATGAAAGAGGGTACCGGTTGGAAGTTACAAGCACCAACCCACGCCGGGACTATTTCCATGGACGATTCCGGAACATTCTTCTCACTTCCATAGCCGTGGTGCCCATCCAAAACCACACTGTGGTCAGCCTAGGCACAGCTGAGGGACGCGTCATCCAGGTGGTGGTTTCCCGCTTTGGCAAGACTGAGCCGCATGTGGACTTCCGCTTGGACACGCTCCCCGTGTCCTCAGAGATGGCCCTGCTGTCTCCACAGCGTCACGATGGCTCCTTATTGTTGGTAACAGGAAACAAGGTCTCTAAGGTTCCTCTGATAGGCCCTGGATGTGAACAACTGTGGACTTGTAGCTCTTGTCTCTTGGCCCCAGCCTTCATGGGCTGTGGATGGTGCAAGACCACCGATCGCTGCATGAGGGCTTCTCAGTGCTCCCCCTCCCATTGGATCCAGGACTCCTGCCCCCTCCTCATAACCACGATTTCTCCTTCCTCTGCTCCACTCGGAGGCCACACCAACATGACAATCTGTGGCAAAAACTTTGGTTTTAATAAGAAAGACCGCTTTGATACCAAGCTGATCAATGTGGTGGTTGCTGGAACAAAGTGTAAATTGGAGAGGAAAGACAGTAGCAATAATCGGTTGGTCTGCGGACTAGATCATGTGAACGCATCCAGCGTTGACTCTGTGGTCAGGGTGCGCAGTGGCAAGGAACAGGCCCAGAAACACGGTTTCTCATTTGTGAACCCAGTTATCACAGAGATCTTCCCAGAGTTTGGACCTAAGTCTGGCGGAACAATGCTCACTATCACAGGTTCATTCCTGGACAGTGGAAATTCACAAGTGATTACCATGGGAAATGCTACCTGTGTGCTGCAGAGTATTTCAGCCACAATGTTGACTTGTCGGACACCACCTCAGCCATCACCGTCCCAACACAAGGTACAGCTGCACATTGATGGAGTGATTCGTGAAGCTCCTGTCAGCTACACCTACAACGAGAACCCACACATCTCCAGCGTCCAGCCCAAGCATTCCTTCATCAGTGGAGGAAGCACAGTGACAGTGAATGGTTTCTACCTCCACTCAGCTCTCCAACCTCAGATGGTTCTCACTGCCGCCACAGAGGGCAAACTCTTCCAAGTGACCTGCAGTCATGATGAGGATAAGCGAAATATCCTTTGTATCACACCCTCCCTGAAAGGCCTCAGTGTTCAGCCTCCAGTTGCCACGAAAATGACCTTTGTGTTAGACGGTTTCTCCACCGATCAGTATGACCTACTGTATGTGGAAGATCCCAAGTTCGAGGAGTTTCAGAAGCCCACCGTTACACCGAGAGGCAACAAGAGCATTCTGGAGATTAAGGTCCCCCCTGTGAATCAGGAGGCGGTGAAAAACGGCGAGGTGCTGAGAGTTTCGAACCGGACCTGTGAGAGTGTCACTTTGGTGGGCAACACGCTCGAATGCACCGTACCCATGGAGCTCCAGACAGCTGCCAAAGAGCTGGAGGTGGAGTGGAAGCAGGCCACATCATCTGTGATCCTAGGTCGTGTGGTCTTGGCTCAAGACCAGGATTACAGGATACTGATAACAGGAGGAGTGTGTGTGTCCATCCTTCTACTGCTCCTGATCGGAGTCTTTGTTTGGATCAAGAGGAAGAAGCATATTGATGATTTAGCTAAGGCTATGGTTTGGTATGACGGCCGGGCTCACATTCCGCACTTGGACATGTTGGCAAACGCGAGGAGTGTCAGTCCGACTAATGAAATGGTCTCTCACGAGTCGGTGGACTATAGAACCACTTTGCTTGAGGACCAAAACTTGCCTCTGTCGCAGACAGAGTCCTGCCGGCCTCATCTCTACGCACATGCCCATGTGGATCTGTCCCCAATGCTGGGACCGATGGAAGGGGATCTGGCATCTCCACTGTTGCCCTCTAATGCACCCATAGATCTGGGCAGCCTCCACCCTGAGCTGCTGAAGGAAGTGCAGCATGTGGTGATCGCCCGGGAAGATCTGCTCTTACATGTGAATGAGATCATCGGGAGAGGGCACTTTGGCTGCGTGTTCCATGGAACCCTGCTCGAACCAGATGGCCAGAAGCAGCACTGCGCCATCAAGTCCTTGAACAGAATCACTGATATAGAGGAGGTGTCTCAGTTCCTGAAGGAGGGCATCATCATGAAAGACTTCAGCCATCCCAATGTGCTCTCTTTGCTGGGAATCTGCCTGCCCAGCGAGGGCTCGCCTCTCGTCGTGTTGCCGTACATGAAGCATGGAGATCTGCGCAACTTCATCAGAGATGAAACTCACAACCCCACAGTGAAGGACCTGATGGGTTTCGGGCTGCAGGTGGCTAAAGGAATGGAATATCTTGCCAGCAAGAAGTTTGTACACAGAGACCTCGCGGCCAGAAACTGCATGCTAGATGAGAGCTACACAGTAAAGGTGGCTGATTTTGGCCTGGCCAGAGATGTGTATGATAAAGAATACTACAGCGTGCACAACAAGCACGGGGTGAAACTGCCCGTCAAATGGATGGCATTAGAAAGCCTGCAGACGCATAAGTTCACCACCAAATCTGATGTGTGGTCGTTTGGCGTGTTGCTATGGGAACTCATGACCCGGGGTGCCCCGCCTTACTCCGATGTGAACTCCTTTGACATCACAGTCTTCCTCCTGCAAGGCCGGAGACTTCTACAGCCAGAGTTCTGCCCAGACGCACTATACAATGTGATGATCGAGTGCTGGCATCCCAAACCCGAGCGTCGGCCCTCCTTCTCGGAGCTAGTGTCCCGCATCGCCGCCATCTTCTCCAGCTTCAGCGGAGAGCACTACATCCTCCTTAACACCACCTACGTCAACATTGATAAGATGACGCCCTACCCCTCTCTCATCTCCTCTCAGAGTAACCTCGACCGTGACTGCTGCACC

Function

symbol description
met Predicted to enable hepatocyte growth factor-activated receptor activity. Acts upstream of or within several processes, including generation of neurons; gland development; and pectoral fin development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in basal plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including anterior neural rod; endocrine system; gut; musculature system; and nervous system. Human ortholog(s) of this gene implicated in autistic disorder; autosomal recessive nonsyndromic deafness 97; carcinoma (multiple); and multiple myeloma. Orthologous to human MET (MET proto-oncogene, receptor tyrosine kinase).

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG:

id description
K05099 MET, HGFR; proto-oncogene tyrosine-protein kinase Met

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_05630944_05688603.mRNA True 4143 mRNA 0.52 20 5630944 5688603

Neighbor

gene id symbol gene type direction distance location
CI01000055_05614889_05616453 NA coding upstream 13483 5614065 ~ 5617591 (+)
CI01000055_05608414_05611862 CAV2 coding upstream 17470 5607506 ~ 5613775 (+)
CI01000055_05565166_05572215 TES coding upstream 58487 5565166 ~ 5572457 (+)
CI01000055_05517350_05524400 NA coding upstream 106324 5517350 ~ 5524620 (+)
CI01000055_05263543_05300250 TMTC3 coding upstream 330295 5263247 ~ 5300649 (+)
CI01000055_05693578_05697926 FAM185A coding downstream 4911 5693514 ~ 5698294 (+)
CI01000055_05728910_05733815 ARMC10 coding downstream 40307 5728910 ~ 5734420 (+)
CI01000055_05737650_05746790 CAX2 coding downstream 49047 5737650 ~ 5747046 (+)
CI01000055_05778957_05783896 TDG.2 coding downstream 90354 5778957 ~ 5784241 (+)
CI01000055_05785486_05792147 TDG, TDG.1 coding downstream 96776 5785379 ~ 5792451 (+)
G240221 NA non-coding upstream 7588 5622817 ~ 5623356 (+)
G240255 NA non-coding upstream 67008 5563139 ~ 5563936 (+)
G240254 NA non-coding upstream 73113 5557617 ~ 5557831 (+)
G240252 NA non-coding upstream 74268 5555646 ~ 5556676 (+)
G240286 NA non-coding downstream 64353 5752956 ~ 5753173 (+)
G240290 NA non-coding downstream 80849 5769452 ~ 5769880 (+)
G240378 NA non-coding downstream 145235 5833838 ~ 5836305 (+)
G240361 NA non-coding downstream 173892 5862495 ~ 5866774 (+)
G240323 NA non-coding downstream 219215 5907818 ~ 5962996 (+)
G240099 NA other upstream 87132 5525472 ~ 5544153 (+)
CI01000055_05163240_05166231 PIGY, PYURF other upstream 464297 5162990 ~ 5166647 (+)
CI01000055_04265119_04272728 NA other upstream 1358229 4265119 ~ 4273913 (+)
G239755 NA other upstream 1375852 4254210 ~ 4255092 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other downstream 398222 6087034 ~ 6088759 (+)
G240344 NA other downstream 475257 6163860 ~ 6164011 (+)
CI01000055_06310117_06334586 GRAMD4B, GRAMD4 other downstream 645721 6310117 ~ 6334801 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024025 met coding NC_007136.7 CM002909.2 18583877 ~ 18679071 (+)