G240361


Basic Information

Item Value
gene id G240361
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 5862495 ~ 5866774 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU272747
CCGAAGTCTTTTGCTTTTGACTACAGGTGAATCTCCAGTTGTCACTGATGATTGTCATTTGGACCTTCCTGGATTAAAATCCACCATCAAAATGATTTTAATTATTCCAGCTGCTGCGAGAAAAGGCTATATATGATCTGCTTCCTGCAGCATCCTCCACATGCGATATAGCCTACTAGCTGGAACTCCTTCTTTATGTAAACAGGCTAAACGACTTCTAGAGTGCAGTAAAAACACTATATGTCATTGTTCTTACCTTGGTTTAATGTTACATTGAAAGCAAATAATTGGACATGTATATTTAGAGGTCTAATATAACACAACAGAGAACGACTGTAAGATCAACAGAGATTGAAAAGAAAAACATTTTCACCATCTGCTGGTTGGACATAAGACATTTCGTAAATGCAGACCTAGCTCATCCACATAGTAATAAAATCATGTACTTTTGAAAGAGGCCAACTGAAGGAGATATTGCCAGACAAATGAATATTGCTACAATCGTTTGCGCTCCCATCTACAGAAAACAATTTACTAAAAATAATTGTGCCACTGAAGCAGCAATAAAGTGATACATTTAAAAATAGAATAAAGTGTCAATTAAACATAAGGCAACCTGAAAGACATTGCCCATTTAAATGTATGTGCGAACTTTCAAATTATAATAAACTTATATCACTAAATATTGTCATTTTCAAACTAATCAGAATTTTAACATCTCATAAAACAGATACGCTGACAACATAGTATAGTAAAAACTATGTAAATGACAGCTGGTAAACGTGTGTTAGTTATTAGTCTTAACCTCTTTACAAACTCCTCTTGACAAATATTTTTCCTTTTTAAAAACATGTTACGAATCCCTCTGCACAGTTTGTCCAGCTTTGTAGCGATACACCACTGACATCTGACTCAACTTATAGTCGGTGTAAATTACTGTATGTGCTTCCTCTCGGATTCCTTCTTCAAGGTCAGAGCAAACTCTGGTGAGTCAAACCTTTAGAAACCATCATCTAACCTCAACTCAGAGCAATCAAGCAAAACTCCATAAAGTGTTATGCTTTGTGCTGTAGGCTGGTTTATTTTTCCTTCTGGCACTGCGGCTTGTGTTTCTCCCATTGGCAGATAGCATTGGCGTAACTGACTATGACTTTATCCATCCAGGAAAGAGGTTGAGGAAAAAGAACAGCACCTTCAAAGAAGCCGAGATGACCTCCATGGAGTGTCAGTGCAAAGATCACATTTTCCTTTTTTTCCTGCTAGTGTGCGAGGGATCGTCAGCAGTGACTGGTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU272747 True 1295 lncRNA 0.37 2 5862495 5866774

Neighbor

gene id symbol gene type direction distance location
CI01000055_05855621_05860457 RLBP1A, RLBP1, RLBP1B coding upstream 1568 5855049 ~ 5860927 (+)
CI01000055_05850191_05851967 NA coding upstream 10054 5849496 ~ 5852441 (+)
CI01000055_05785486_05792147 TDG, TDG.1 coding upstream 70044 5785379 ~ 5792451 (+)
CI01000055_05778957_05783896 TDG.2 coding upstream 78254 5778957 ~ 5784241 (+)
CI01000055_05737650_05746790 CAX2 coding upstream 115449 5737650 ~ 5747046 (+)
CI01000055_05886107_05906704 MFGE8B, MFGE8 coding downstream 19333 5886107 ~ 5906926 (+)
CI01000055_05916161_05919605 HAPLN3 coding downstream 49341 5916115 ~ 5920093 (+)
CI01000055_05946358_05975922 PPIP5K1, PPIP5K1A, PPIP5K1B coding downstream 79584 5946358 ~ 5975922 (+)
CI01000055_06054137_06069292 GLSL coding downstream 187363 6054137 ~ 6069466 (+)
CI01000055_06072755_06075308 SH3GL3B, SH3GL3 coding downstream 205981 6072755 ~ 6075513 (+)
G240378 NA non-coding upstream 26190 5833838 ~ 5836305 (+)
G240290 NA non-coding upstream 92615 5769452 ~ 5769880 (+)
G240286 NA non-coding upstream 109322 5752956 ~ 5753173 (+)
G240221 NA non-coding upstream 239139 5622817 ~ 5623356 (+)
CI01000055_05608414_05611862 CAV2 non-coding upstream 248720 5607506 ~ 5613775 (+)
G240323 NA non-coding downstream 41044 5907818 ~ 5962996 (+)
G240391 NA non-coding downstream 117958 5984732 ~ 5985411 (+)
G240392 NA non-coding downstream 118645 5985419 ~ 5986568 (+)
G240328 NA non-coding downstream 119816 5986590 ~ 6024283 (+)
G240407 NA non-coding downstream 169681 6036455 ~ 6037768 (+)
CI01000055_05614889_05616453 NA other upstream 244904 5614065 ~ 5617591 (+)
G240099 NA other upstream 318683 5525472 ~ 5544153 (+)
CI01000055_05163240_05166231 PIGY, PYURF other upstream 695848 5162990 ~ 5166647 (+)
CI01000055_04265119_04272728 NA other upstream 1589780 4265119 ~ 4273913 (+)
G239755 NA other upstream 1607403 4254210 ~ 4255092 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other downstream 220051 6087034 ~ 6088759 (+)
G240344 NA other downstream 297086 6163860 ~ 6164011 (+)
CI01000055_06310117_06334586 GRAMD4B, GRAMD4 other downstream 467550 6310117 ~ 6334801 (+)

Expression


Co-expression Network