CI01000055_05850191_05851967


Basic Information

Item Value
gene id CI01000055_05850191_05851967
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 5849496 ~ 5852441 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_05850191_05851967.mRNA
AGATAAAAACGACCGTTCATCAATTTATTTTCGACAAGGCTGGAGCTTGAAGATCCCTTGGGGGAGCATTTGTGCTGGCATTTGTTTTGACCAATCAGAGTACAATGCTGTCCAAACGGTACGGCCAATCAAATAGCCGGATTTGGGTCTTGTCTCGGCATGTTCTCGTATCCTGGCTTCTGTAACCGGTCCACGTGTTTGCAGAGGTATGTGCTAGCAGTGCTATTGTGTAAAAATATGAAGGTATTATAATGCTAATAAGTGTTATTTTTGTCGGAATGTTTTACAATATAATATTATATCTGTTATGTATCGTAAACGCGACAAATTACGTTATTGTTTCTTTGCTATATATGATTAGCTAGCCAGTGCTAAATGACTGTACTGATGAATGATTCACAACGTTAATATAGAGAAATAAATAATTGCCTATTTCAAACCATATACTCCTTTAATAGTTTTTGAATAAAAATAATTATGAAGTTAAAATCGTTAATGTATCTAAACTTAGTAACTTACTAACTACATAATTCCTTAAGATTGCACTGTTCTTGATATTATTTGTCTTTTATTTTTTAGTAGAGAGATTTAATGTCATAATTCTTGACTTATAATATAGGCTACATCATCCACAAATGTTTATTCACAGAAGTAACTTCTTTTTTGACAGATGTGAAACTACATGGTGACACATAATGTCTGCTTTACCCTGGGAATACTCTACCAGCCGTGGTGTGGACCGAAATATCTCGTCTGCCTCAAACCAAGAAACAACCACTATTTCTCATCAAGCTAAAAGGTGTAAACAAAGGAAAAAGAACGAAATTAAAGATTCCACCATTGAATTACATGAAGTGTCATGTGACCAGAAAAGAGGCAAGAAAAGAAAGTCAGACAAGCTTCTGGAAAACAAGACGGGGTTTGTTGAACACAGAGATGTTTCGGATTCTGTAACTGAGCAGTCAAATCTTGTGCAATTCAAAAGGCCTAGAATAACCCCTCATACACTGCCTGGTGAAGCTGATTCTGCACTGTCTCTCACTAACAGCTGGGAGGTGGACAGTGGCTTTTCATCTGAAACCAGCCCTCCCACTAGTGGCAGGAGTTCGCCATGTGTGGGAATAGACCACTCTAGGCTAGTAGCTATGGACTGTGAAATGGTCGGCACTGGACCTGGTGGCCGGTGTAGTGAATTGGCACGCTGTAGCATTGTCAATTATTATGGCAGTGTTATATATGATAAATATATTTTACCTCAACATCGGGTCACAGACTACCGCACAAGATGGAGTGGCATTAGGAAACATCATTTAGCACAAGCAGTGCCTTTTGAGGATGCTCAAAATGAGATTGCCAGCATCCTCAAAGAGAAGATTATTGTTGGCCATGCCTTATTTAATGACTTCCGGGTGCTTGACCTCTCCATCCCGGCACAAATGATTAGGGATACATCTTTCTGCAGCTTGCTGCGAAAGTTGTGTAATGTTGATGATAAAGCCAATATCTCTTTGAAGAAACTGGCTGAGAAGCTTCTTAAGAGGGCCATACAGAATGACAGAATGGGTCACTGCTCTGTTGAGGATTCTCGTGCTGCCATGGACCTGTACAAGCTGGTAGAGGACCAGTGGGAAAAAGACATCCTGTTCTGGGATTCAAACACAGACCATACCTCAAAACCCAACAACTCCCTCAAGCACTACATGCAGGACCAGTACTGGCCAGAAAGTATAATGGACTGCAGCCTGTAAGACCAAGAGTTAGGATAACGGTGCCAACCTCAATCGTCATTGTTGTTTAATGTTATTTAAACCTCGAACTTGACATGTTAATATTTCTGTAAGGAAATACATGGAAGTGTAAGTTGTAGAACTGTAATGTTGCACTTGAAAATCTTATTTAAATAACTTAAACTTTGACTTTGTAAAAGTTGATAATGTTTATAAAGGGATTTTAACATTTATAACAGCTTTTTGAATCTACACAGACTGTATTTTAGGGAATAACTTCATTATGAGTTTTTCATTTGTATGATCAATGTTATGTATGATCAATGTTATCAAGGTGTAATGTTAATGACACATTATGCTTTCTGTGGAGTTGCAGATAGCATTATTGTTATATTGACATTTACATATTGACAATTGTAACAAAAACATTGTTATACTGACAATGCTGTTCATCCAGAAAACAGTGAAAAGTTTAAATACAAAAGAAATGTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_05850191_05851967.mRNA True 2222 mRNA 0.38 3 5849496 5852441

Neighbor

gene id symbol gene type direction distance location
CI01000055_05785486_05792147 TDG, TDG.1 coding upstream 57045 5785379 ~ 5792451 (+)
CI01000055_05778957_05783896 TDG.2 coding upstream 65255 5778957 ~ 5784241 (+)
CI01000055_05737650_05746790 CAX2 coding upstream 102450 5737650 ~ 5747046 (+)
CI01000055_05728910_05733815 ARMC10 coding upstream 115076 5728910 ~ 5734420 (+)
CI01000055_05693578_05697926 FAM185A coding upstream 151202 5693514 ~ 5698294 (+)
CI01000055_05855621_05860457 RLBP1A, RLBP1, RLBP1B coding downstream 2608 5855049 ~ 5860927 (+)
CI01000055_05886107_05906704 MFGE8B, MFGE8 coding downstream 33666 5886107 ~ 5906926 (+)
CI01000055_05916161_05919605 HAPLN3 coding downstream 63674 5916115 ~ 5920093 (+)
CI01000055_05946358_05975922 PPIP5K1, PPIP5K1A, PPIP5K1B coding downstream 93917 5946358 ~ 5975922 (+)
CI01000055_06054137_06069292 GLSL coding downstream 201696 6054137 ~ 6069466 (+)
G240378 NA non-coding upstream 13191 5833838 ~ 5836305 (+)
G240290 NA non-coding upstream 79616 5769452 ~ 5769880 (+)
G240286 NA non-coding upstream 96323 5752956 ~ 5753173 (+)
G240221 NA non-coding upstream 226140 5622817 ~ 5623356 (+)
CI01000055_05608414_05611862 CAV2 non-coding upstream 235721 5607506 ~ 5613775 (+)
G240361 NA non-coding downstream 10054 5862495 ~ 5866774 (+)
G240323 NA non-coding downstream 55377 5907818 ~ 5962996 (+)
G240391 NA non-coding downstream 132291 5984732 ~ 5985411 (+)
G240392 NA non-coding downstream 132978 5985419 ~ 5986568 (+)
G240328 NA non-coding downstream 134149 5986590 ~ 6024283 (+)
CI01000055_05614889_05616453 NA other upstream 231905 5614065 ~ 5617591 (+)
G240099 NA other upstream 305684 5525472 ~ 5544153 (+)
CI01000055_05163240_05166231 PIGY, PYURF other upstream 682849 5162990 ~ 5166647 (+)
CI01000055_04265119_04272728 NA other upstream 1576781 4265119 ~ 4273913 (+)
G239755 NA other upstream 1594404 4254210 ~ 4255092 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other downstream 234384 6087034 ~ 6088759 (+)
G240344 NA other downstream 311419 6163860 ~ 6164011 (+)
CI01000055_06310117_06334586 GRAMD4B, GRAMD4 other downstream 481883 6310117 ~ 6334801 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location