CI01000055_05737650_05746790 (CAX2)


Basic Information

Item Value
gene id CI01000055_05737650_05746790
gene name CAX2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 5737650 ~ 5747046 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_05737650_05746790.mRNA
ATGTCTAGTTTCATTTTGCGTATTGTTGATGCTGATGTCGTTCTTTCCTCTTCATTTAAGTTTGGATTCAGGAAGTGGAAGAGTCATGTAACAGAACGGCCCTTTGAGAAGAGGTCGGACATCGTGAAGGAGCTTTACTCTGAGCTGAATGTTATTAAACCTCACTCAGCAGGTTCATTGTTCACTTGTGGCAATGTTCTCTACGTGTTTCTGTTTGGCTGGTGGATCGCTCTGGTTTATGTTTTCGTTGGTGTCCTAATGTTCCTCACAGTTTTTTGCATCCCCTACGGGAATCTCTGCTGGAGGTTGTCCTGCTATTTTCTGTGGCCATTTGGGAAGTCGATCGAAAAGGCCAGTGTCTCTGTGCCAGTGTACAGTGTGAAGATCCTCCAGCGTGATTCCTCTCTAGAGGCAGAGGAGGACAGAAAGCCTTCCTCTCCTCTCCTGCTGCCCACACCTGTGGAGGAGACCATAGAAGAGCCCACAGGAAGTCCAAATGATGAGCACTACTGGCGGCGCATCAGAACATATGCATGGCTGTTTGTGGGTTACCCTCTCCTCGTCATCACACATTTTGTACTGTGTCTGATCTCCTGGTTGCTGGTTTTCACCATTCCTGTGGCCAAAATGAGTGCCAAGACCTTACATACCATCCTGCTCATGCCTCCCGAACACATTCACATCAGCCGAGCCACAGAGGCTCAGGAGCACGAAGGCCAAGTCATTTTATGCTGCTATCATGCAGTGAACCTCTACTACTATAAATACACAGTGGATGGGATCAATGTTTTTGCTGTCATTATAGTGTCTCTAGTGATTGGTTACGTGGACAAAACAAACCAGTTTGCCAGCTCTGAAGTCAAGTTTGCCACAGCAATCAGCTCCATCATTCCACTCTCGTATTACATTGGCATGGGTATTGCAAGTATTTCAGCTCAGAGTAACTTTGCTGTCGGGGCCGTGGTGAACGCAACATTTGGCTCCATCACAGAGTTGACGTTTTACATCACAGCATTGCTCAGAGGTCACCGCCAGGGAAACAAGTGCCTGCAGGAGATAGTGAAGGCGGCTCTTACTGGAACCCTGCTGGGCTGCATCCTCTTCATACCAGGGATCTGTATGATAATCGGAGGGCTCAGGCACAGGGAGCAGAGGTTTAACAGTCGCTCGGCGGGGGTCAGCTCCTCTCTGCTTTTCATATCAATAGGGGGAGTGTTTGCCCCTACGCTCTTCTCCAAAGCCTATGGGAATATAGTGTGTGAGAACTGTACTAACTCTACAGGAACCAACAGCAGCGGATCCTTCATGTGCAAAAACTGCCACTACGACCTGAGTGAAAACAACTACAGCTTGTTTCACAGTCACATTGAGCCTCTAGTGTACACCATTTCCATTCTACTGCCCGTATCCTATATCATCGGCCTCATCTTTACTCTTAAAACACATTCACACATCTACGACATTCACGTTGGTGATGGAAGGGCAGGTCATCTTGGAGCGTCAGTGCACTGGTCCCGATGGAGAGCTTTGCTTATCCTCATCGTTGCCACGGTGCTGATGTCTGCATGTGCCGATCTGACCACCGAACACATTCAGCCCATACTCAGCCGCTCGTCTGTATCTCAGTATTTCATAGGTGTGACTCTTTTGGCCATGATCCCTGAAATCCCAGAAATTGTCAATGGAGTCCAGTTTGCTCTTCAGAATCAAATCAGTTTGAGCGACCTGCATCTGTGGGCCAGCATCTTTAGTGTCATCGTTGTAAATTATAGTTTTATGGATGGGAAGTGTGATTACTTTCAAGGTACTGCTCTTGTGGTGGTGTATCTCATCCTGTTGGCGATGTATTTCTTTGCTCCGTCTCCTGCTGGTTGTTGAGAGACATTTCAGCACAATGCATTCATTATGTGATTTACAGTATGAAACACTGTTTACTGTTTCAGATTAATGTTAGACTTACTGTGTGATTTAAACTATTACTACTGATAACATTTTATCCTTTGGTACATCCTTTGGTACATTCTGTTCTGTTCAATAAGAAGCGGATCTGATTTAGCACTTTACTATACACAATTACAAAAGACGACTTGTGATAATAGATGGATTTATTATTTTACTAAAAATGAGACGCACA

Function

symbol description
cax2 Predicted to enable calcium:proton antiporter activity. Predicted to be involved in calcium ion transmembrane transport and cellular calcium ion homeostasis. Predicted to act upstream of or within calcium ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_05737650_05746790.mRNA True 2134 mRNA 0.46 16 5737650 5747046

Neighbor

gene id symbol gene type direction distance location
CI01000055_05728910_05733815 ARMC10 coding upstream 3230 5728910 ~ 5734420 (+)
CI01000055_05693578_05697926 FAM185A coding upstream 39356 5693514 ~ 5698294 (+)
CI01000055_05630944_05688603 MET coding upstream 49047 5630944 ~ 5688603 (+)
CI01000055_05614889_05616453 NA coding upstream 120189 5614065 ~ 5617591 (+)
CI01000055_05608414_05611862 CAV2 coding upstream 124176 5607506 ~ 5613775 (+)
CI01000055_05778957_05783896 TDG.2 coding downstream 31911 5778957 ~ 5784241 (+)
CI01000055_05785486_05792147 TDG, TDG.1 coding downstream 38333 5785379 ~ 5792451 (+)
CI01000055_05850191_05851967 NA coding downstream 102450 5849496 ~ 5852441 (+)
CI01000055_05855621_05860457 RLBP1A, RLBP1, RLBP1B coding downstream 108003 5855049 ~ 5860927 (+)
CI01000055_05886107_05906704 MFGE8B, MFGE8 coding downstream 139061 5886107 ~ 5906926 (+)
G240221 NA non-coding upstream 114294 5622817 ~ 5623356 (+)
G240255 NA non-coding upstream 173714 5563139 ~ 5563936 (+)
G240254 NA non-coding upstream 179819 5557617 ~ 5557831 (+)
G240252 NA non-coding upstream 180974 5555646 ~ 5556676 (+)
G240286 NA non-coding downstream 5910 5752956 ~ 5753173 (+)
G240290 NA non-coding downstream 22406 5769452 ~ 5769880 (+)
G240378 NA non-coding downstream 86792 5833838 ~ 5836305 (+)
G240361 NA non-coding downstream 115449 5862495 ~ 5866774 (+)
G240323 NA non-coding downstream 160772 5907818 ~ 5962996 (+)
G240099 NA other upstream 193838 5525472 ~ 5544153 (+)
CI01000055_05163240_05166231 PIGY, PYURF other upstream 571003 5162990 ~ 5166647 (+)
CI01000055_04265119_04272728 NA other upstream 1464935 4265119 ~ 4273913 (+)
G239755 NA other upstream 1482558 4254210 ~ 4255092 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other downstream 339779 6087034 ~ 6088759 (+)
G240344 NA other downstream 416814 6163860 ~ 6164011 (+)
CI01000055_06310117_06334586 GRAMD4B, GRAMD4 other downstream 587278 6310117 ~ 6334801 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024030 cax2 coding NC_007136.7 CM002909.2 18889332 ~ 18906871 (+)