CI01000057_04547933_04555967 (RAB43)


Basic Information

Item Value
gene id CI01000057_04547933_04555967
gene name RAB43
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4547757 ~ 4555988 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04547933_04555967.mRNA
GTATATTTACCGTGGTAAAGCAGTCAGGCGCTGCACCGAGACACCTAAAGCGGCGCTGCTGATGTTCTGCATCTCTTCCGCGTTGGCGCGCGTGCAGGTGCCGTGTGTGTTTCTCCACGTCAATAAGCGGAGGATCCGTAAGCTCGAGCTGATAGTCGAGCACTCACAGCACAGATATGTCATTGCTGGACTCTGATGACAGCTACGATCTAGTCTTCAAAATAGTTCTGGTTGGAGATGTCGGTGTCGGCAAAACGTGTGTGGTTCAGCGTTTCAAAACCGGTATATTCATGGAAAAACAAGGGAACACGATCGGCGTGGATTTTACCATGAAGACACTGGAAATACATGGGAAAAGGGTGAAGATTTGGGATACAGCCGGACAGGAACGCTTTCGCACAATCACACAGAGTTACTACCGCAGCGCCAACGGTGCCATCATCACTTATGACATCACAAAGAAGGCCACTTTTATGTCTGTGCCAAAGTGGATGGAGGATGTGAAGAAATACGGTGGTTCCAACATTGTTCCTCTTTTAATTGGTAATAAATCAGACTTGACTGACCAGCGTGAGGTTTCGTTTGCGGATGCGCAGGCCATGGCTCATCAGCTGGACTTTATTAGTGCCATCGAGACTTCAGCCAAGGACTCTAATAATGTGGAAGAGGCATTTATCAAAATGGCCAGTGAGCTCATCCTCAGACATGGCGGGCCCATGTTCACTGAAAACGTAACGGACAGCTTTAAACTGAACAGCAAGGATGTGACCAATGCGGGCTGGGGATGTGGGTGTTGATGACTGTGCTTTCAGAAAGCA

Function

symbol description
rab43 Predicted to enable GTPase activity. Predicted to be involved in autophagosome assembly and intracellular protein transport. Predicted to be active in endomembrane system. Orthologous to human RAB43 (RAB43, member RAS oncogene family).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
K07930 RAB43; Ras-related protein Rab-43

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04547933_04555967.mRNA True 818 mRNA 0.49 3 4547757 4555988

Neighbor

gene id symbol gene type direction distance location
CI01000057_04491831_04508031 CRTC1 coding upstream 39222 4491831 ~ 4508535 (+)
CI01000057_04473417_04481843 KLHL26 coding upstream 65863 4473222 ~ 4481894 (+)
CI01000057_04443549_04450402 RAB3A, RAB3A.L, RAB3AB coding upstream 96619 4443549 ~ 4451138 (+)
CI01000057_04419591_04430486 PDE4C, CRTC1B coding upstream 117271 4419591 ~ 4430486 (+)
CI01000057_04364304_04364681 NA coding upstream 182883 4359098 ~ 4365796 (+)
CI01000057_04601541_04604168 NA coding downstream 45182 4601170 ~ 4604419 (+)
CI01000057_04612115_04631293 RAF1, RAF1B coding downstream 55866 4611854 ~ 4631871 (+)
CI01000057_04644947_04646881 NA coding downstream 88959 4644947 ~ 4647013 (+)
CI01000057_04684204_04698051 METTL1, METTL1-B coding downstream 128216 4684204 ~ 4698051 (+)
CI01000057_04703416_04711776 CYP27B1 coding downstream 147365 4703353 ~ 4711933 (+)
G245479 NA non-coding upstream 61651 4485283 ~ 4486106 (+)
G245467 NA non-coding upstream 89898 4455149 ~ 4457859 (+)
G245478 NA non-coding upstream 160429 4283935 ~ 4387328 (+)
G245586 NA non-coding upstream 284297 4263225 ~ 4263460 (+)
G245457 NA non-coding downstream 721 4556709 ~ 4557013 (+)
G245464 NA non-coding downstream 24477 4580465 ~ 4583262 (+)
G245644 NA non-coding downstream 41964 4597952 ~ 4598411 (+)
G245652 NA non-coding downstream 97419 4653407 ~ 4653646 (+)
G245653 NA non-coding downstream 97795 4653783 ~ 4654019 (+)
G245486 NA other upstream 335676 4209897 ~ 4212081 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 other upstream 703066 3842028 ~ 3844691 (+)
G245401 NA other upstream 1009315 3537569 ~ 3538442 (+)
G245231 NA other upstream 1255195 3087096 ~ 3292562 (+)
G243991 NA other upstream 1895197 2635237 ~ 2652560 (+)
G245725 NA other downstream 542697 5098685 ~ 5103606 (+)
CI01000057_05564489_05579041 NA other downstream 1017916 5564489 ~ 5579843 (+)
G245856 NA other downstream 1081666 5637654 ~ 5643340 (+)
G245857 NA other downstream 1099288 5655276 ~ 5657239 (+)
CI01000057_05912175_05916639 NA other downstream 1355825 5911767 ~ 5917211 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003108 rab43 coding NC_007122.7 CM002895.2 440305 ~ 450099 (+)