G244358


Basic Information

Item Value
gene id G244358
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 570530 ~ 571028 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU277369
TGAAGGACGAGAGAGGACCAGGCCTGGACTTTATTTTGTTTTATTATGTTTGTGTGGCCGGCAGACGTCCGCGAGGGTCTGCCGGCATTACTTTCGTTTTGTTCTTTGTTTATTTTATTAAAGTTTATTGTTTGAATGTTCGCCGGTTCCCGCCTCCTTCTTCCCCCATCATACGAACTGTGTTACATTGGTGCCGAAACCCGGGAGGAAGGAGGGACATGCTGTCGGAGAGCCCTCGCTGCTGAGGGGGATCGCGGTGCTGCGGAGTTCGGGCAGCGCGGGAGTGAAGACCGCGAGAGGCTGCCCGAGGCGGTGGTACTGGAGCCTTGTGAAAGGTGGGACGGAGACCCGGATGCCGTGCTCCTGGGACGAGGTGGGGTGGCTG
>TU277370
GGGAACGGCGCGAGGCCGGTGACGCGAGAGTTAACGAGCTCCACCTGTGAGGCGCACCGGCCTCGAGTCTCTCACGGAGGAGCTCCGGAAGCATAAAAGGAGGAGCGACGACAGTGAAGGACGAGAGAGGACCAGGCCTGGACTTTATTTTGTTTTATTATGTTTGTGTGGCCGGCAGACGTCCGCGAGGGTCTGCCGGCATTACTTTCGTTTTGTTCTTTGTTTATTTTATTAAAGTTTATTGTTTGAATGTTCGCCGGTTCCCGCCTCCTTCTTCCCCCATCATACGAACTGTGTTACATTGGTGCCGAAACCCGGGAGGAAGGAGGGACATGCTGTCGGAGAGCCCTCGCTGCTGAGGGGGATCGCGGTGCTGCGGAGTTCGGGCAGCGCGGGAGTGAAGACCGCGAGAGGCTGCCCGAGGCGGTGGTACTGGAGCCTTGTGAAAGGTGGGACGGAGACCCGGATGCCGTGCTCCTGGGACGAGGTGGGGTGGCTG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU277369 False 385 TUCP 0.57 1 570530 570914
TU277370 True 499 TUCP 0.59 1 570530 571028

Neighbor

gene id symbol gene type direction distance location
CI01000057_00561471_00562830 NA coding downstream 7673 561229 ~ 562857 (-)
CI01000057_00534471_00559759 NA coding downstream 10771 533588 ~ 559759 (-)
CI01000057_00475661_00476027 NA coding downstream 94503 475392 ~ 476027 (-)
CI01000057_00459703_00467870 ABHD6A, ABHD6 coding downstream 102660 458943 ~ 467870 (-)
CI01000057_00420698_00421063 NA coding downstream 149467 419986 ~ 421063 (-)
CI01000057_00628126_00628851 NA coding upstream 56687 627715 ~ 630166 (-)
CI01000057_00873279_00873578 NA coding upstream 302246 873274 ~ 873578 (-)
CI01000057_00938618_00949690 NA coding upstream 367043 938071 ~ 949779 (-)
CI01000057_00956994_00965947 NR1D4B coding upstream 384605 955633 ~ 965947 (-)
CI01000057_01083731_01092073 NA coding upstream 512686 1083714 ~ 1092631 (-)
G244339 NA non-coding downstream 90113 480197 ~ 480417 (-)
G244338 NA non-coding downstream 90376 479943 ~ 480154 (-)
G244287 NA non-coding downstream 154921 413912 ~ 415609 (-)
G244305 NA non-coding downstream 162701 407220 ~ 407829 (-)
G244359 NA non-coding upstream 3508 574536 ~ 574885 (-)
G244360 NA non-coding upstream 4839 575867 ~ 576145 (-)
G244367 NA non-coding upstream 60092 631120 ~ 631439 (-)
G244370 NA non-coding upstream 61548 632576 ~ 632905 (-)
G244380 NA non-coding upstream 182902 753930 ~ 759844 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other upstream 1230556 1801528 ~ 1806454 (-)
CI01000057_01904867_01921400 NA other upstream 1349028 1904533 ~ 1921905 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 3320707 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 4357716 4927533 ~ 4931420 (-)
G246780 NA other upstream 4640082 5086312 ~ 5283617 (-)

Expression


Co-expression Network