CI01000062_03927588_03933449


Basic Information

Item Value
gene id CI01000062_03927588_03933449
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 3927588 ~ 3934032 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000062_03927588_03933449.mRNA
ATGTTGCAGATGGATCTTGAAGATAATGAAACCTGCATTAATTCCTTTGATGCACAAGTAGAGGAGCTGCAAGGCAACATCAGTGTTCTTGAAGCAAAGTTAGGTGAGAGCGAGGCCCAGAGGTCCACCCTACAAGCAGAGCTTGAGTCCGTCAAAGACGACTATACAAAGAGTGTACTTGAAGTGTCACAACTATCTGCATGTTTGGAGAAAACACAAAAGGAACAACAGTCTAGTTCTGCATTAGTCACAGAGTTGGAGTCTCTCAGTGTAACTAATGAAAAACTTAAAGTTTCCCTAGAGCAAGAGAAGTGCAAGCGGGCAAACCTTGAAGCAATGCACAACAATCTTATGGAACAAAAACTAAAGTTGGAATCTGATATCCAGGAATTAAAAGCAGATGCTCAGAATTCTCAGGAGCAAATGGAAAAAATAAAGCAGGCACATGATTGTCTGCTATCTCAGATTGTGGAACAGCAAACTCACATAGAACAGCTTCAGTCTGAGAAGAATCTTGCTCCAAACTCTGATGCAGACACAATTAATAAAGAGCAAATCGCATATGAGAATGACCAAGATATTTGCGAAATGGCATTTGCCAACACATCTATTTTGCCCTTTGAAGAAGACACTTCTGTTCTGAATATTTCATCACCTGGAGAGCAGCTTAATTCACAAGAAGAGGCCCAAACATCCTTGTCATCAGATGAGGATATCAAACAATTAACACTGAAAGAGCTAATGCAAAATCAATCCAGGGAGCTAGAGGAGTTATCTCATGTTCTTAAGGAGACTGTCAGAACCATGGAGGAGCAAACTGGGGTTAAAATAGAGCAACTCAAATTACAGCATTCTAAAGAGCTTCAGAGCATGGAGGACCAAATGCTCAATATCAAAAATGAGTTGGAGGCCAAACTCAGAGAAGAAAAACAACACACAGAGATCTTGTCCTCACAACTGGAGACAACCATGCAGCAACTGCAGGAATTGGACCTTGCATCATCATCCTCCTTACTGGCTACTGAAACCTCGCAGGAAATGGAAAAAAAGACATCTGAAGCACAGGAAAACATAATGCATCATCCTGAACAGTCAGACTCCACTCCAGATATTAGCCAGGAAAGTGAAAAATCACTTGTGGAACTTGAAGCGCTTAAGGAAACTCTGAGGACGCGAGAAGAGGAGATTCGGCATTTGCAATCCCAGTTTGAAGTCTTGGAATCTGAAATGGCAATTAGAAAACATTTGTGCTCAGACTTGGAGGGCAAAGTCCGTGAAATGGAAATAGAAAAGACAAACAGCACAGGCAAATTGATGTCTGTCACTCAAGAAAACCAGAAACTGAACAACCACATTGGAGAGTTGAAAATAGAGATTGATTCATTGGAACTACAGCTACAGACCTCCAAATGCCAGCTCTCAGATGTTATAGAGATGATGGAAAGCTTAGAGATGGCAAAAGGTGAGTGGGATGAGAAATTTTTCCAGATTGAGAGCGAACTAAAAAGAGTGCGTTCTGAGAAGGCCAATTTAGAGAAGCACATCCTGTCCATGGAGGCTGACATAGAGGAGATACAAGAACAGAAACAAAGGCAAACAGCAGAGCTTGAAGCAGCTAGGAGGACAAATTGCAGCCTTGAACAACAACTTAATACAACTATGGCAGAAGGTGGGCGACTCAAAGAAGAGCTTATTTTGTGTGCTGATGAAAGGGAAAGTGAAAATCACTCCTTAATGAAGTGGAAAGAAAAGGCTGAGCTTCTGGAGAAGAGAGAGACTGATACACGAGAACTTATAAAAGAACTAGAAGAGGACATTAGGGCAGGGAAAAGGCAAAACGAAGCTGCATCTAACCAAATTGATGTCCTGAGGAGAGAAAAAGAGCAACTAATTCAACAGTCTCAAAACTTTGAGAATACAGTGGCTCTTTTGTCTGAAGACAATAAAATTTTGTTAAGTGAATTGAACGGTTTAAAGAACGATGAGAATTTTGCTTCAAGAGAGTCTGAAAACATGTCTTCCAGAATCCATTCACTTGAGAATGAAAATGTCAGGCTGTCCCAGTCCCTTGAATCGTCCCTCTTGGAGAAAGGTGAAATAGCCTCCAGGTTGATTTCTACTCAGGAGGAAGTAGCACAGATGAGACGGGGCATTGAAAAACTGAAGGTACGAATTGAATCTGATGAACGGAAAAAGAACCACATGAGTCAGCTGCTCAAAGCTGCACAGAGGAAGGCAGATGTTCTTCAGGACAACATTGAAAAGCTCGAGAGAGAAAAAGAACTTTCTGAACAGAATCTTGAGGATGCCATTCTTCAAGCAGAGAGTGCCAAAGCTGAGCTCGAGGAAATACAGGTTGAAAAGCAAGAGCTTACCAAGAAAATTGAAGAGATGGTCACCGAGCTGAAGGATCTCAAGGAGGAGAAGTATAATCTTGAGCAAGAACTTCAGCAAAAGAACAGTCTAATTGAGGAATTGCAGTTGTCCAATCAAGCAGCTTCTGAAAAGCTTAAATCTGTGGAAGAGGCAACAGTGAACCAGCAACAAATGATCACAGACTTCCAATTTAAAGTTGGTGCCATGGAGGAGGAACTTCAACTCTGTCGAACAGAGGTAGAATCGAAAGAACTGAAAGCACAGGATTTGACCTCTCAGTTGCTGTCTTTGCAATCTGAAAACAAAGAGTTTGCACAGAGAGTCCTTGAATATGAAAGGTGTCAGGCGGAGCTTTGTTCAACCAACAAGTCAGTCTTGGAAGACTTTGAAAACAGACAGCAGGAGCTTAGCAAAGAAAACGCCCGACTTCAGTCACAAATAGATGAGCTGCGTGTGCTATCTTCAATTCAGGAAGAGCGTGATGAATTGCAAAAGGACAAGGTTGAGTTACAGTCTACTATTGCACAGCTGGAGGAGAAGACTCATTTGCAGTCTTCCAAGATAGAGGTCATGCAGAAAAATATCACTTCTCTAGAGAGCAATATCCAACAGCTAGAGAGCCAACTTGATGCAATGAAGCTCATGAACTCAGAACTTACAGAAAAGGAGTCTCAAAAACAAATCGAAATGTACAAGTCTGTGCTTACACTACATTTTCATTGCACCTTTCAGCTTGGCTTGGAAGCATTGACAATAGAGAAAGATGGTCTGCAGAAAAATGTATCTGATATTCAAGAAAATCATGAGGTTCAGATGAAGGAAAATAACAGGAGACATGAGGAGAACCTAAAACATATACAGCAGCAGCATGAGATGGAGATTAATACACTGAAGGAAGAAAAGATGGTGGTTGAAGAAAGGGCTGCACAGTATCTATCTGACCTCAATAGCTTCAAGTCTCAAAATGCAGATGTGGAGTCTGCCTTAAATGAGTTACAAAATAAACTGGGATATTGTGAAAATGAAAAGGCAGAGTTAGACTCAAAGGTTGTGCGCTTGTCCAAGGAGAAGGACAGTGCTATGAGTAAGATCAATTTGTGGATGAAGTCATGCAAACAGCTGGAGAGTGAGAAGCAGGCACTTCAGGAAGAACTTCAGCAGCAGGGACAACAGATAGCAGCACTGCAGGCCTTACAGAAACAAGGTGATGGCAGCAGTGATGCCCTGCAGGAAGAACTACAGGAGCTGAAGGAAGCTCTGGAGGAAAAGAGCCGTGAGGCGGACGACAGCATGGACCGATACTGCAGCCTCATGGTCAAAGTTCACAAGTTGGAAGAGACCAATGAAAGCCTCAAGAGCCAGCTCAAGCAGTTAAGCACCCAGACAAAGACACCCAAGAGCAGGAGGTCCCTGAGGTCTGAGAAGAGTGACATGGAGAACAATAAGCCAGTGGAAGACACCAAGAGCGTGCCAGCAGGAAAGAGACAAAGAGCAGCAGATGATACCCCCAGCAAAGCACAGGAAGCCCTGCACAGTATCACCAAGAGACTGAAAGCTGCGGCTGCCACACCTAAAGCCACCCAAGACGATGAGGATTTCAGACCAGAGGGTTTGCCTGAGCTTGTTCAGAAAGGTTTTGCGGATATTCCAATTGGAGAGATGAGCCCATTCATCGTTCGCAGAACTACAGCACAGCGCTGCAGCCCTCGTCTGGTCGCCCGAACAACTGCAGCTCAGCAGAGCTCCGTATTAGCAGAACATCCTGTGCAAATCTCCAAACAGACAGCAGAGGGCAGAAAATCAAACACAGTGAGTGGAACTACCTGTCTATTTCCTGCAACCACAACCAACTACATCTTTCCAAGTAAAGGATTAAAAAACTATTACTAAATATTCTTTTGAGCTCTTTTGTATTGTGTCCCATCTCTCGTTCTGCAGTTTTGTTTTGTTTTCTTCTTTTCAAATCTCCCTCTTGCTTGTTCTCTCTCCTCGACCGTCATACGCCCCCTAATGCTGATTGGTTAGACGTTTGTTGTTGGTATCGGCCCGACTAACTTCCAAACAGTGTATTTGAAAAACTACTGAGTCCCGCTTTAATGACTCGATGGCTCACTCATTAAGACAGTGACTTAACGCCACCAACTGGTGATTTTAGTTTAAAATTTAAAAGTATCACTTTATTTTTACCATCATTGCATATTTCTCTATTGAACATTTTTACTTCTTACGCAGAAGGATGTTAAATGCGTCAGGGGGTTTGCCACTCTAAGAAGTTTGGGAACCATGATCTAGACTCAACAATACATTAACATCCACTTTATTACATTTACAAATAGATGCATTTATTTAAATCAGTTTACAGATTTGGAAAAACAAACAATTTGTCAACAGTATTAGCAGTACGGTAATACCAAATTTTTAAGAGTAGACCAAAATAGTTACAAAGCTAAAAATGTTATCCTAATTACAGAGA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000062_03927588_03933449.mRNA True 4849 mRNA 0.42 8 3927588 3934032

Neighbor

gene id symbol gene type direction distance location
CI01000062_03904672_03920716 NA coding upstream 6835 3903987 ~ 3920753 (+)
CI01000062_03846495_03878349 PROX1, PROX1A coding upstream 48725 3844902 ~ 3878863 (+)
CI01000062_03608961_03614541 NA coding upstream 312135 3608843 ~ 3615453 (+)
CI01000062_03575943_03597236 EFR3BA, EFR3B coding upstream 329023 3575943 ~ 3598565 (+)
CI01000062_03487108_03498318 ECT2L coding upstream 428707 3487108 ~ 3498881 (+)
CI01000062_03957204_03981763 KCNK2 coding downstream 22760 3956792 ~ 3981912 (+)
CI01000062_04000935_04003736 NA coding downstream 66903 4000935 ~ 4004205 (+)
CI01000062_04010092_04010726 NA coding downstream 75279 4009311 ~ 4010748 (+)
CI01000062_04011834_04018478 NA coding downstream 77802 4011834 ~ 4018478 (+)
CI01000062_04121615_04144068 GRHL1 coding downstream 187583 4121615 ~ 4145488 (+)
G260892 NA non-coding upstream 40657 3886637 ~ 3886931 (+)
G260795 NA non-coding upstream 88142 3838254 ~ 3839446 (+)
G260796 NA non-coding upstream 89861 3837320 ~ 3837727 (+)
G260884 NA non-coding upstream 97928 3829440 ~ 3829660 (+)
G260883 NA non-coding upstream 98211 3829103 ~ 3829377 (+)
G260902 NA non-coding downstream 49603 3983635 ~ 4005133 (+)
G260908 NA non-coding downstream 65400 3999432 ~ 4000653 (+)
G260905 NA non-coding downstream 72616 4006648 ~ 4008187 (+)
G260901 NA non-coding downstream 101347 4035379 ~ 4070400 (+)
G260904 NA non-coding downstream 146520 4080552 ~ 4082535 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012225 cenpf coding NC_007128.7 CM002901.2 32720413 ~ 32743249 (-)