CI01000062_03904672_03920716


Basic Information

Item Value
gene id CI01000062_03904672_03920716
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 3903987 ~ 3920753 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000062_03904672_03920716.mRNA
GTATATAACGTTTTGATTACTGTGATGTGCACTGACACAAACTGAAAATTAGCCTACGTTTTAACATGAGGTAAACAGTGGACTAATAGGCTAATGAATCTGGAGATTTGGACTGGAGTATTATTTTTTTGTGAGTTCATTGAATGGTTTTTAAAAACTAAATAAGAATCTAAAATATTACAAAAATGCATACCTTCTTGCTCTTTTGCTTCACGTTCTTGGTGGTGTTTCTTTTTTTTTTCTGGAAAATGGATAGGTTTAGAAAGTTGTTTTGATTAAAGATTACGAGCGCACGTGTATTTAAAAATAATGATGTGTACGAATAAATCATTTATTATAAATACTGCAATACTCCATTAAAAATAATAGTTGTCATTTTTTATTTCATGTGGCTCATTTTCCCCTGATGATCACACGATGGCGCCATGAAGCCAAATATCGAGGTCGGTCGGTGGTGTGGACGCTGCTCGCGGACGGGCTTTAGGACCGCTGGGTGTGTGGGGCATTGCCGTAAGCCGCCTGTCTGCTTGGTGCAGCTCGTTTTTCGGAGTCTTTTCGCCGAACATGTGGTGTGACAGTGGCGTCGCTACACTTGCCGCAGTCACTAACAAAACCGATTGAGACCGAGACACCACTTTCTGACGAGTGCAAGGAAGCGTGACACGCGAGCAGCAGGTCAAGAGCAATGAAAACCGAGGGAATTGAGGGTACTGAAAGATTTCCGAGCCCCGGTAAAGGCCGGGGACTCAAAGCCACTAAACAATTCAAAGTTGGTGATCTAGTGTTCGCCTGTCCGGCGTATGCTTACGTGCTAACAGTGAACGAGAGAGGCGGACACTGCGAATGCTGCTTTACCAGGAGAGAAGGACTGTCGAAGTGTGGAAAATGTAAACAGGCCTATTACTGCAATGTAGAGTGTCAGAGAGGAGACTGGCCCATGCACAAGCTGGAGTGCTCAGCCATGTGTGCATACGGAGAGAACTGGTGTCCATCAGAAACAGTACGACTGGTCGCCAGAATAATACTGAAACAGAAGTGCCAGGCAGAAAGTACTCCTTCAGAAAGAGTGTTGACTCTCAGAGAATTAGAAGCACATCTGGACAAGTTGGATAATGAGAAGAATGAAATGAACGATACAGACATTGCTGCGCTACACCACTTTTACTCCCGGCATCTGGATTTTCCTGATAATGCAGCACTTACTGAACTCTTCGCTCAGATCTTCAACAGTTACATTGACCTCCTGTATCCAACAGAGGATAGAATTGAACGGTTGAGAGATTCTTACTTCTTCACATGTGACTGTAAAGAATGCACCTCAAAATCAAAGGACAAAGCCAAAATGGAGATCCGTCAGAAGCTTAGCACACCTCCAGAGGATGAGGAAATCACACAGATGGTCATTGAGCTGCTGGAAATCTGCGAACTAAGCCTGGAGAAAATGGGTTCAATCTTTGCTGAAACCAATGTGTATATGCTGCATATGATGTATCAGGCAATGGGTGTCTGTCTATATATGCAGGATTGGGACGGAGCAATGAAATATGGCGAGAAAATTATCCATCCCTACAGTGTGCACTACCCTCCTTACTCACTGAATGTGGCATCTATGTACCTGAAACTTGGAAGATTGTACCTAGGACTTGAGAAGAAGACACAAGGAGTTAAAGCTTTAAAGAAGGCTCTTGCAATCATGGACATTGCCCACGTAACCATGGAGATGAAATCCATATATGGCTCTCATACCATCTGCTATGACCCAGAGCACGTGTTTGGCAGAGCCCTTTGGAAGCAGTATGGTGCCATTCATCTCCCTACAGATCACTGCATTCAGGAAGACAAACAGGAACAGAAGTGTAACCATTCAGAAGTGTATAACAGCAAGGGATTAGAAATCTTTACACATAAACACAAATCATGTGGTGCATTTACTATGGTCATCAGTCGTCGGTTGTCTGGACTTTTGGATGAGAGCTAACTGATCCACCCGATAAGTCGTTCATTTAAATTCCGAA
>TU296118
TGCTTGGTGCAGCTCGTTTTTCGGAGTCTTTTCGCCGAACATGTGGTGTGACAGTGGCGTCGCTACACTTGCCGCAGTCACTAACAAAACCGATTGAGACCGAGACACCACTTTCTGACGAGTGCAAGGAAGCGTGACACGCGAGCAGCAGGTCAAGAGCAATGAAAACCGAGGGAATTGAGGGTACTGAAAGATTTCCGAGCCCCGGTAAAGGCCGGGGACTCAAAGCCACTAAACAATTCAAAGTTGGTGATCTAGTGTTCGCCTGTCCGGCGTATGCTTACGTGCTAACAGTGAACGAGAGAGGCGGACACTGCGAATGCTGCTTTACCAGGAGAGAAGGACTGTCGAAGTGTGGAAAATGTAAACAGGCCTATTACTGCAATGTAGAGTGTCAGAGAGGAGACTGGCCCATGCACAAGCTGGAGTGCTCAGCCATGTGTGCATACGGAGAGAACTGGTGTCCATCAGAAACAGTACGACTGGTCGCCAGAATAATACTGAAACAGAAGTGCCAGGCAGAAAGTACTCCTTCAGAAAGAGTGTTGACTCTCAGAGAATTAGAAGCACATCTGGACAAGTTGGATAATGAGAAGAATGAAATGAACGATACAGACATTGCTGCGCTACACCACTTTTACTCCCGGCATCTGGATTTTCCTGATAATGCAGCACTTACTGAACTCTTCGCTCAGGTAAAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000062_03904672_03920716.mRNA False 2015 mRNA 0.43 12 3903987 3920753
TU296118 True 702 TUCP 0.49 5 3904511 3915150

Neighbor

gene id symbol gene type direction distance location
CI01000062_03846495_03878349 PROX1, PROX1A coding upstream 25124 3844902 ~ 3878863 (+)
CI01000062_03608961_03614541 NA coding upstream 288534 3608843 ~ 3615453 (+)
CI01000062_03575943_03597236 EFR3BA, EFR3B coding upstream 305422 3575943 ~ 3598565 (+)
CI01000062_03487108_03498318 ECT2L coding upstream 405106 3487108 ~ 3498881 (+)
CI01000062_03480918_03482967 CCDC28A coding upstream 419878 3480918 ~ 3484109 (+)
CI01000062_03927588_03933449 NA coding downstream 6835 3927588 ~ 3934032 (+)
CI01000062_03957204_03981763 KCNK2 coding downstream 36039 3956792 ~ 3981912 (+)
CI01000062_04000935_04003736 NA coding downstream 80182 4000935 ~ 4004205 (+)
CI01000062_04010092_04010726 NA coding downstream 88558 4009311 ~ 4010748 (+)
CI01000062_04011834_04018478 NA coding downstream 91081 4011834 ~ 4018478 (+)
G260892 NA non-coding upstream 17056 3886637 ~ 3886931 (+)
G260795 NA non-coding upstream 64541 3838254 ~ 3839446 (+)
G260796 NA non-coding upstream 66260 3837320 ~ 3837727 (+)
G260884 NA non-coding upstream 74327 3829440 ~ 3829660 (+)
G260883 NA non-coding upstream 74610 3829103 ~ 3829377 (+)
G260902 NA non-coding downstream 62882 3983635 ~ 4005133 (+)
G260908 NA non-coding downstream 78679 3999432 ~ 4000653 (+)
G260905 NA non-coding downstream 85895 4006648 ~ 4008187 (+)
G260901 NA non-coding downstream 114626 4035379 ~ 4070400 (+)
G260904 NA non-coding downstream 159799 4080552 ~ 4082535 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00003753 NA coding CM030121.1 CM030121.1 17205313 ~ 17229181 (-)