CI01000062_03480918_03482967 (CCDC28A)


Basic Information

Item Value
gene id CI01000062_03480918_03482967
gene name CCDC28A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 3480918 ~ 3484109 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000062_03480918_03482967.mRNA
ATAATTTGGATGACACAATGGAGGAAAAGAGTAAGAAACGTAAAAGCCCAAAACCGTCTTCCAATCAGCCTGCTCCCCCAAACACTGCACGAAAAACAACATCCAGCAGCAGATTAGGTGTTGGCGGTATGGTCACGCACTCCAGTCAGAGGACAAAGTATCGCAGAGGGGTGAGAGATAAACCAAGGCCTCAGAGTCAGTCGGGTAAGAGTAACCAGTCGGGCCACATCCAGCATTCGTTTCTCACAGACGTGTCTGATGTTCAGGAGATGGAGAAGGGTCTGCTCAGCCTTCTCAATGACTTCCACTCTGGAAAATTACAAGCCTTTGGCAACGAGTGCTCAATCGATCAGATGGAGCATGTGCGAGAAATGCAGGAAACACTGGCTCGCCTGCATTTTGACCTTTATGGAGAAGTGGATGAGCTGCCAGAAGACCAGAGGAAGTCCGCTTATGACACTAACATGGATAAATTGTTATTAAATCTGGAAGAGTTGAGCTCCTCAATGTATCCTTTCATAGTTTCACCAATTATGTTGATCAACTGGATGATATTGTAGTGTTTAGTTAAAAATGATCAGGTAACTTTGTGTAATCCTGAAATTTGTCTGCATATGCATTTTGTAGTACAACAGCAGCATGTTATTGCCTTAAAATCAAACGGTTCTTTTAAAGGATTTTCTAACACAAGTCATTTCTTTTATGCCTTAAAAACTGAGTTTGAAATCCTTAACTATTATTCCTCAGACAAAAGCTCAACCTTGCTGACACTCAAGATGTCCCCAGAACCTCCAGCATATGAAATACAAAGGCTCAACCATGCAGGATACTGTGTGCATATTTAGCACACAGCTATGGAGAAACACCAGTATTACAGTCATATCGGTGACACTGTGGTCTTAAACTTGTAGAATTTGTCAGCTTGGCTTGTTTGGACTCTATAGTTTTATAGATGTGACATCAAAGAACAAATCCAAACAGTTGTAATGAAATGCCCACTTGTCTTTCTCATCGGATCATTTCACATGTTACCACATGTTCATAAGATAATGTTCGATTACATTGTGGCATCTAATTTTATGTTTTAAATGTTGCTTTGGAGTTGTCCAATAGAAGCACCTTTGCATTATCACTAATTCACTTTAACAAGGAACTGATGGGCTCAGTTTGAGTTCATTTATGCCCTGTCTTAAAGCGATTAATAAGATAATGGCAGGTTATTTTCAGTTTCCTAAGACTGCAGAATGAAAGTAAAATTGCATTGTATATTTTGGTTATAGATTATAGTCCTATTTACATATTTTATTTTGATTTAAAACATTGGAAATGTAATATGTAACCTACTGGCTTTTTATGTGCATGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTTTTTATTCCTGCTTCTATCA

Function

symbol description
ccdc28a Predicted to enable guanyl-nucleotide exchange factor activity. Orthologous to human CCDC28A (coiled-coil domain containing 28A).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000062_03480918_03482967.mRNA True 1702 mRNA 0.32 4 3480918 3484109

Neighbor

gene id symbol gene type direction distance location
CI01000062_03422781_03423731 TMEM121A, TMEM121B, TMEM121 coding upstream 56169 3421906 ~ 3424749 (+)
CI01000062_03313225_03326549 NA coding upstream 154193 3312194 ~ 3326725 (+)
CI01000062_03308286_03311512 DNAL1 coding upstream 168486 3308286 ~ 3312432 (+)
CI01000062_03059551_03060037 NA coding upstream 420716 3059464 ~ 3060202 (+)
CI01000062_02884548_02919912 NA coding upstream 560643 2883254 ~ 2920275 (+)
CI01000062_03487108_03498318 ECT2L coding downstream 2999 3487108 ~ 3498881 (+)
CI01000062_03575943_03597236 EFR3BA, EFR3B coding downstream 91834 3575943 ~ 3598565 (+)
CI01000062_03608961_03614541 NA coding downstream 124734 3608843 ~ 3615453 (+)
CI01000062_03846495_03878349 PROX1, PROX1A coding downstream 360793 3844902 ~ 3878863 (+)
CI01000062_03904672_03920716 NA coding downstream 419878 3903987 ~ 3920753 (+)
G260700 NA non-coding upstream 9227 3460658 ~ 3471691 (+)
G260723 NA non-coding upstream 95940 3384764 ~ 3384978 (+)
G260720 NA non-coding upstream 100154 3379795 ~ 3380764 (+)
G260719 NA non-coding upstream 101162 3379374 ~ 3379756 (+)
G260673 NA non-coding upstream 127474 3353238 ~ 3353444 (+)
G260741 NA non-coding downstream 4434 3488543 ~ 3488791 (+)
G260745 NA non-coding downstream 12756 3496865 ~ 3497168 (+)
G260698 NA non-coding downstream 117177 3601286 ~ 3605087 (+)
G260764 NA non-coding downstream 134167 3618276 ~ 3618638 (+)
G260768 NA non-coding downstream 154509 3638618 ~ 3639073 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location