CI01000062_03308286_03311512 (DNAL1)


Basic Information

Item Value
gene id CI01000062_03308286_03311512
gene name DNAL1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 3308286 ~ 3312432 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000062_03308286_03311512.mRNA
GCGGATACGCGGCTCGTGCTCGTCGGAAGCATCACTTCGCGCACGCGCTTTACGTCAGGGTAGTTCCATAGCAACCGTAAAGAACAACATGGAGGAGAAAACAGGCGAAAAAGCGAGCGAGGCCACGGCAGTAAAGCTTTATGGTCAGATCCCTCCCATTGAAAAAATGGACGCATCTCTCTCTAATCTTGTCAACTGCGAGAAATTATCCCTGTCTACAAACTGTATTGAAAAAATTGCCAACTTGAATGGTCTAAAGAATCTTAAGATATTGTCCTTGGGCCGGAATAACATCAAAAACCTTAATGGACTTGAGGCAGTAGGTGATACTCTGGAGGAGCTGTGGATCTCTTATAACCTCATAGAAAAACTGAAGGGAATTCACGTCATGAAGAAACTCAAAGTGTTATACATGTCCAATAACTTGGTCAAAGAGTGGGGGGAGTTTCTGAAGCTGGCAGATCTTCCATCATTGGTGGACCTCGTCTTTGTGGGAAACCCATTAGAAGAAAAGTGTTCCACTGAAGGCAACTGGTTAGAGGAGGCTACTAAGAGGCTTCCCAAACTTAAAAAGCTAGATGGGAACCCCATCATCAAACGAGAAGAGGAGGAAGCTGAAGGGGAGAGTTAATGCAATTTCTTTTAATATTCTAAAGGGTGCATTTTTATTGTTCAAACACCAGCATTTTTACTGTTAAAAGTCTGTGCAATGTTTGCATTTTTTTATTATTTATTAAAAATTAAGATAAAAAGCTAAATCCGTTTTCTTGAGCTTTAACACTATTTGAATAGATCTGAAAAGCACACACTTGACTCGTGTTTTGTTAAGCCTTAGCACAAGCGGAGATAAACAATCAATGGGTCGTGCAGAAGGACATATTGGACGGTACTAATTACTTACACTGTAAAAAAGAATCGATGCGTGCCATTGTTACCTCAAATAATTATTTCTACTTGATCTAAACCTTAAAAATCACTTTATTAATTTACTACAACTTAATTCAGTCAATACTGAATAATATTTTTGACTTGAATAACCAGTTAATTTACATGTTACCACATGAAGGACATATTAAAGGTTAAGAAAGTTAATAACTAAACTTTTTTACATTGTGCTTTTCAGGGTGACCAATAACAGGTTAAACTGTAACAGTAAAATGTAAGCCAGTTATGACATTAAAGCAAGTACAAAACTGGATGCATCTAGGGTATGACAGGCTATAACTGTTTCTTTAGTGGTGCTATGCTTTAGTATGTCTCTATTAGGAGGCTACTTTAAAAAAATATATATGTATCTAAAGTTTATTAATGACTATAAAAAGGTCAATTTTAATTAAATGCATTTTCTAAAAGCATATTTTTTGTAATAATTTTTTTGGACATACAGTAAGCAAAACTCCTAATTAATTGGCAGTTATTCTGTCGTTGTCATACCGTTTCATTAATATGCATGTTGTTAACACATCACACTGTATGTGTTGCACAGTGAGAGCAATTTGTAAACACTTTGTAGCATGTCTCCATAGAGTAACTTCAGTGTACTGTGGCCAA

Function

symbol description
dnal1 Predicted to enable alpha-tubulin binding activity and dynein heavy chain binding activity. Predicted to be involved in outer dynein arm assembly. Predicted to be located in cell projection and microtubule. Predicted to be part of dynein complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 16. Orthologous to human DNAL1 (dynein axonemal light chain 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG:

id description
K10411 DNAL1; dynein light chain 1, axonemal

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000062_03308286_03311512.mRNA True 1551 mRNA 0.36 7 3308286 3312432

Neighbor

gene id symbol gene type direction distance location
CI01000062_03059551_03060037 NA coding upstream 248084 3059464 ~ 3060202 (+)
CI01000062_02884548_02919912 NA coding upstream 388011 2883254 ~ 2920275 (+)
CI01000062_02804022_02857974 NA coding upstream 450259 2801162 ~ 2858027 (+)
CI01000062_02663074_02721051 KIDINS220B, KIDINS220, KIDINS220A coding upstream 585781 2663074 ~ 2722505 (+)
CI01000062_02613774_02651046 MBOAT2, MBOAT2A coding upstream 656732 2613774 ~ 2651554 (+)
CI01000062_03422781_03423731 TMEM121A, TMEM121B, TMEM121 coding downstream 109474 3421906 ~ 3424749 (+)
CI01000062_03480918_03482967 CCDC28A coding downstream 168486 3480918 ~ 3484109 (+)
CI01000062_03487108_03498318 ECT2L coding downstream 174676 3487108 ~ 3498881 (+)
CI01000062_03575943_03597236 EFR3BA, EFR3B coding downstream 263511 3575943 ~ 3598565 (+)
CI01000062_03608961_03614541 NA coding downstream 296411 3608843 ~ 3615453 (+)
G260576 NA non-coding upstream 41966 3221480 ~ 3266320 (+)
G260612 NA non-coding upstream 68508 3239314 ~ 3239778 (+)
G260595 NA non-coding upstream 93687 3213568 ~ 3214599 (+)
G260592 NA non-coding upstream 100404 3207575 ~ 3207882 (+)
G260582 NA non-coding upstream 121862 3186219 ~ 3186424 (+)
G260661 NA non-coding downstream 17354 3329786 ~ 3331059 (+)
G260669 NA non-coding downstream 32914 3345346 ~ 3345596 (+)
G260673 NA non-coding downstream 40806 3353238 ~ 3353444 (+)
G260719 NA non-coding downstream 66942 3379374 ~ 3379756 (+)
G260720 NA non-coding downstream 67363 3379795 ~ 3380764 (+)
CI01000062_03904672_03920716 NA other downstream 592079 3903987 ~ 3920753 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location