CI01000062_03575943_03597236 (EFR3BA, EFR3B)


Basic Information

Item Value
gene id CI01000062_03575943_03597236
gene name EFR3BA, EFR3B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 3575943 ~ 3598565 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000062_03575943_03597236.mRNA
GTGTTTGTGGATGCTGTGGGGCCCTGAGACCCCGATATAAGAGGCTGGTAGATAACATCTTTCCTGAAGACCCTGAGAAACTAGACCGTATCGGTGCCTACCTGTCAGAAAGACTATCCAGAGACGTTGCCCGGCATAGATATGGGTATGTTTGTATTGCTATGGAGGCGTTGGACCAGCTACTGATGGCCTGTCACTGTCAGAGTATAAACCTTTTTGTGGAGAGTTTCCTTACTATGGTGCGCAAACTGCTAGAGGCAGACAAACCCAACTTACAGATCCTGGGCACTAACTCTTTTGTGAAGTTTGCAAATATAGAGGAGGACACACCGTCATACCATCGTAGCTACGATTTCTTTGTCTCACGCTTCAGTGAGATGTGCCATTCCAGTTACGAGGATCCAGATATTCGCACAAAGATTCGTATGGCAGGGATCAGGGGTCTTCAGGGGGTGGTGAGGAAGACTGTCAATGATGAACTGCAGGCAAATATTTGGGACCCTCAGCACATGGACAAAATCGTGCCGTCTCTATTATTCAACCTCCAACAGGATGAAGCCGTAGAGAGAGCTATAAAAACTCCTCTGGGGAAATCACTGACCACAAGTAATGGCATTGCCAACAACAATGGCCCTATTGATTTGGCCCCGGTTTATATGTGTTTCCTGTTTCTGATTGCTATCAATAGGTCTCCTTCCCCAGAGACCGAGAAGGATAAGGAAAGTCCAGTGGAGCTGACCGAGAGATGCTTTCGAGAGCTGCTGGGACGAGCAGCCTACGACAACATCAAGAATGCTGTGAAACCTGTGCTCATGCACCTTGATAATCATTCACTTTGGGAGGGCAAAACATTTGCAGTGCGCTGTTTCAAAATCATTATGTACTCCATTCAGACCCAACATTCACATCTGGTGATTCAGCAGCTATTAGGCCACTTGGATGCCAACAGTAAGAATTCAGCCAGAGTGCGTGCTGGGATAGTGGAGGTGATCTCAGAAGCAGCGGTCATAGAAGCCAGTGGCTCCATAGGGCCAACGGTACTGGAGGTGTTTAATACTCTACTAAAGCAGCTCAGGCTCAGTGTGGACTACGAGCTCACTGGATCCTATGACTCTTTTGCAAACATGGGCTCCAAGGTCATCAAAGTACACGAGGAGAGACAACTCCAAGAATCTGTCATTAAAACCATTGGCTCATTTGCAAACACGCTGCCCACCTACCAGCGCTCAGAAGTCATGCTGTTCATCATTGGTAAAATTCCTGTGCCTGGCATGTATCCGGCTCTGGGGTCGGCCAACACCGGGGTTGAGGGCAGTAGGATGATCCAGATTATGCTGCTAAAGTCTCTGCTGCAGGTAACAGCAGGATTCCAGTCTACGAACATTTTGACAGCACTGCCCACCTCATTCCTGGACCCTCTCTTGTCCTTTACTTTGATGGAGGACGCAGAGATCCGTCTACTCGTTCTCGACATCCTCATCAGCATTATTGATCGTCATGACAACCGGCACAAATTCTCCCCTGTCAGAATTATACCAGATATCTCAGTACTAAAGCTGAAAGTAGACAAATGCTCAAGACAGGATAACCTGTTCATGAAGAAACACAGCCAGAGGCTGTACCGCCACATTTACCTGGCCTGCAAGGAGGAAAGCAGCGTCCAGCGACATTTTGAGTCTCTTCATATGCTGCTGGGGTTGATCTGTGTGGAACTGGCCAATGAAGAGGTGGTGGTGGACCTGATTCGACTGGCTTTGGCCTTACAGGACCTGGCCTTGACTGAAGAGGCTCTTCCTATATATACCCGCTGTGCCATCCACGCTCTGTCAGCTGCTTATCTGAACCTCATCAGCCAGCTGACCACTGTGCCCACCTTCTGCCAACACGTCCATGAGGTGATCTATCTATCTATCCGTCCACCTATGTCTGTCTGTCTGTTTGATGGAGTAACAGTTAAAGGGTTTTGTTTTCTGCAGGTGATCGAGTCAAGAAAGAAACTGGTCCCTTTCCTGCTTCCAGAGGATGTTCTAGTTGAGAGCTCTAAGATCCCAGAGAAGCTGGAGAAGGTGGAAGGAGAGGTGCTGTTTGTGCAGGCTAAGATAGCAGAGATGCTGGGTGGCAGTGGATACAACACAGAGAGACTGGCCGCACCATACATCCCACAGATCACAGATGAAGACAGACTGTCCAAGCGAAAGAGCATTGGAGACACCGTCTCTCTGCAGTTAGAGATTGATTCTAGAAACAGTCCAGAGAAAGAACAGAGATCCACAGCAGAGCAAATAACATTTGAAACTCTTAAACAAGCCATTGTAGACAGTGTGAATGTGGAGGAGCTGGAGAGAGAGCGGCGAAGGCAGGTGGTGGAGAGGTTTCAGAACGCTCCATTTGAGGAGATAGCAGCCCACTGTGGGGCCAGGGCTTCCCTATTGCAGAGTAAACTCAACCAAATCTTTGAAATCACAATCAGGCCTCCGCCGAGTCCGTCTGGCTCTGTTGGGAATGGTCACGGCCGGACCCGCTCCATACCAGTGTATGAAATGGACTTTCCAGACCTCTGTGTATACTGATAGACCCTGGAGTCCCAGTCGCAGCATACAGCTGTTTTCATCCCACTATTATCACTCCTTCTCAATGTCCAGGTGTAACTATGTCTTCTAAACCATGTCCTCTAGTGCAGTGGTTCTCAACTGGTTTGGAGTCCCACTTTACTCAACACACACACACATGAATTGTAAGAATATCACTAATACTAATGAATAAACAGTAAAAGGTAAGGCTATTAAATAACAGTCATAAACTAGTTTTTGTTAATACAGTAAATTAAGGTAGTAAGAGCCACCACAAATAATACAAATATACAAAACAACACAAAGTGAAAATAAAGTGGCATTTTGGGGTTAAGGAAACAACAGTTACCATAGTAAATACACAATACAATGACCTGTTAATGAAACATGGACATTGATCCTGATGAATAGAATGAACATCATACCTGCATGGAAATCATTCTCAGCTAATACACAAAGTACCCGTTACGTAATTTATTGGTACTTGTTTGTAATTTCATGACTTAATAATTTACAACATAACTACGACGTTGCATGCTCAGTGCGCGCCGCCGCATTTGCGCATGCATTTCAAGAGTGCGCGCTACAAGGCAAGCACAGTATAATGGCTGACAGGACAGGAAAGTTCGTTTTTCTGAGGTGAGGGACTTTTTATTTCATAACAAATTACGAAAATAACGTTAGAATAATGACACCGACAAATAGCCTGACAACATCTTAACTTACCTCAGATACTGAATCAGGACAACACATTTCAGGCAGTATTTACTTTAAACTGCTTCTGACAAGAGTCAGCTTTCACGCACGTTTTTCAAAATAAAAGTCTCGCATCAGAAAAAAACATTGAATTACATTTGATGTTGTTTCTTTGCACACTCAAAACGGTCTTGCGACCCACCAGTTGAGAAACACTGGTCTAGTGTAATATCGGACTTTAGATAAGGATTATGGCTGTACTTTATCCTGAGGTCTATGCCAACAAAGACTAACAAACCAAGAGAATATACCATATGTTGGTTAAATATGCACTTAATCACTTAGTCTAGATGAAAAAGGACAGAATTTATTGACAAATGATCGTATCTTGTCTGTGTATTGAGTCTGTTGTTCAGTCTGTTGTTCAGAGCAAGTGATTGGTTTTCTTGTACAACTAAAAAGTGAAGCTGCCTTAAATTTTGTATCTTAAGTTAAGAACATTTGTTTAAGAATGTCCTAATATTTCCAAAAACTTTTTCAATGTGGGTACAAACAGTTTAGTGAAATACAAGCTTTGTTTGCATGTTTAAACGTCTCTACATGCTGCAATAACAGTTGTATTTAAAGCAATAA

Function

symbol description
efr3ba Predicted to be involved in protein localization to plasma membrane. Predicted to be active in plasma membrane. Orthologous to human EFR3B (EFR3 homolog B).
efr3b Involved in phosphatidylinositol phosphate biosynthetic process and protein localization to plasma membrane. Located in actin cytoskeleton; cytosol; and plasma membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000062_03575943_03597236.mRNA True 3899 mRNA 0.44 20 3575943 3598565

Neighbor

gene id symbol gene type direction distance location
CI01000062_03487108_03498318 ECT2L coding upstream 77062 3487108 ~ 3498881 (+)
CI01000062_03480918_03482967 CCDC28A coding upstream 91834 3480918 ~ 3484109 (+)
CI01000062_03422781_03423731 TMEM121A, TMEM121B, TMEM121 coding upstream 151194 3421906 ~ 3424749 (+)
CI01000062_03313225_03326549 NA coding upstream 249218 3312194 ~ 3326725 (+)
CI01000062_03308286_03311512 DNAL1 coding upstream 263511 3308286 ~ 3312432 (+)
CI01000062_03608961_03614541 NA coding downstream 10278 3608843 ~ 3615453 (+)
CI01000062_03846495_03878349 PROX1, PROX1A coding downstream 246337 3844902 ~ 3878863 (+)
CI01000062_03904672_03920716 NA coding downstream 305422 3903987 ~ 3920753 (+)
CI01000062_03927588_03933449 NA coding downstream 329023 3927588 ~ 3934032 (+)
CI01000062_03957204_03981763 KCNK2 coding downstream 358227 3956792 ~ 3981912 (+)
G260745 NA non-coding upstream 78775 3496865 ~ 3497168 (+)
G260741 NA non-coding upstream 87152 3488543 ~ 3488791 (+)
G260700 NA non-coding upstream 104252 3460658 ~ 3471691 (+)
G260723 NA non-coding upstream 190965 3384764 ~ 3384978 (+)
G260720 NA non-coding upstream 195179 3379795 ~ 3380764 (+)
G260698 NA non-coding downstream 2721 3601286 ~ 3605087 (+)
G260764 NA non-coding downstream 19711 3618276 ~ 3618638 (+)
G260768 NA non-coding downstream 40053 3638618 ~ 3639073 (+)
G260779 NA non-coding downstream 57648 3656213 ~ 3656451 (+)
G260803 NA non-coding downstream 107182 3705747 ~ 3705968 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location