CI01000062_03846495_03878349 (PROX1, PROX1A)


Basic Information

Item Value
gene id CI01000062_03846495_03878349
gene name PROX1, PROX1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 3844902 ~ 3878863 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000062_03846495_03878349.mRNA
ATATATAAAACGTTAACTATGAACTAATGTCAAACTTTCTAATTTTTAACAATATATAATGTTAGTGAATGTTTCTGCTAAAAAGTTCTTTTAAAGTGTTACTTATCATATCTAGCCTTTTTAGGGCTCTCTGTGTTGGCTGAGAGAATGAGTTGGGGTCTTTAATGGTTCAAAACTGCGATTTCCGAGAACTCACATAGCCTACATTTCTTGGCTAACACAGCAAGTGCGTTTTCCGAATCGTGCGTTTACATAAATATGTACTTGAATGAGTTTTGTTTTCGAAAACAACTTTTTTTGGTTTTAAGTTGAACAGCTGTAAATATTTGGGGAGGTGCGCATAGGACGCAATGGCCGTATGAGGTGAAAGACATCTAAAACGATCAGATTTTGTTGCCTTCTTGTCTGGACTTGTCAGATGTCTATATTTAGTGACAGCAGAAGCAGTGTATCCACTCTATTTCATATCTTAAATGTAAACTTCTGACTATGTTAATGGTGCGTCTTGAAGAACAGTTAATTTAAGTTAATTATTTGCAAACGACTAGTTGTCAAACGGCCGTTCTGCTTAATATGAAGACAATATCACATTATATTATTACAGTGATTTTTTTTTCTTTATAACATTTTTATTTGTTTGTTTAGAGGAAGTAGTTGCGTTATTAAATATCTGTTAAGCGCTTTAGTCCTACTCAGTGCGAGATGAAGTAGTCTATTTACAGTGCGTTACATTCATAATGAGCAAAGCTACATATGTGCTTTTTTATTATGCACGGAGAACTTTTTATCATCTGATTTTGAGCGTCATGAATAGGATAATGTTGGGCGATCTTAAATCACCGTCACCAGACTTGTAAAACGTACAATTAGCCTTTATTACACTGCGTTATCCACAAAAAGGATTTGCTTAAATTCATTTGATCTGGAAACCCAGAATTTAATTAATGTGGTGTATTATACTTGTATTTTTGTTCTCATTTAGATAGGGGGATATAAGTGTCTGCTAATCTTCAAAAGATAATATTAATGGCTAAGTGTCTTTGCAAATATCAACTGTAACTGTTTTACTAAGGGGGGAAAAACAAGGGTACCTCAAAACTTACCAAAGTGAACAAAGCCTGCAAGTAGTCTATGTGGGCACAATAGTGGCAGGACATGTCTGGCTAAACACAGCAGTATGATTTGTATCTTGTTCTTACATGAGAATTATACTGTTTTTTGGCATGCAGCTTTACACAGATTTAAGTATAACTACTTTTTTTTTTTTTTTTTTGAGAGAGAGAGACTATTAAAATAATTTTCAAATGACAACTTTGTAACTGATCCTTAATTTATATATTTTTTTGCTGTTAACCTCTTTTGTCAATTTATATTGAATGTACTGTAGACCGACTTCAAGCATTTTTAATACATTGTGTGTTGTTCTTTAAGACATTAGACTGTTTCAGACTGCATGTAGAATTGGGCACAAGAAACTTTGAGACATATAAAGAAAATTATTCATCAGTCCTTTCTTGTTGGCTAGGTTCCCAGGGTTCTCGAGCTGTGCCCAGCTGACAGGCTTTCAAAAATGGCACAATAACAGTTCCAGTGATGCCTGACCATGACAGCACATCCCTCTTAAGCAGACAAACCAAGAGAAGAAGAGTTGACATAGGAGTGAAGAGGACTGTTGGGCAAGCATCTGTGGTTTTTACCCGCACAAAAGCAACCTTTTTCAGTGCCATGAATCCCCACGGTTCCGAGCAAGATGTTGAGTGTTCAGTGGTGCAGCACGCAGACGGCGAGAAGTCCAACGTGCTTCGCAAGCTGTTGAAGAGGGCGAACTCTTACGAAGACGCTATGATGCCCTTTCCAGGGGCAACTATCATCTCCCAGCTCCTGAAAAACAATTTGACCAAAAATGGAGGCAGTGAGACTAATTTCCAGGGAAGTGGCCTCTCGAGCACCGGATCAGAGATCCAGCAGGAGGATGCTTGCAGCAACTCCTCGCGGGGCAGCCCTCAGGAGTGCCTTTCACCATTCAACAGGCCCTCCATGACCCAATTTGAAATGGAGAGGCTAACAGATGAGCATCTTAGGGCCAAACGAGCCCGGGTGGAAAACATCATCCGTGGGATGAGCCATTCTCCTAGCGTCACGCTCCGTGCAGGTGATAACGAGCGCGAGGGGGCAGCCCAGCCCCCGAGTCCTCGTGAGAACTACCGGGAAAACAAGCGCAAGCAGAAACTGCCACAGCAGCAGCAGCAGAGTTTCCAGCAACTCGTCTCCGCGCGCAAAGAGCAGAAGCACGAGGAACGCCGGCAACTGAAACTACAGCTGGAGGACATGCAGAAGCAGCTGCGGCAACTGCAAGAGAAGTTCTACCAGATCTATGACAGCACTGACTCTGAGAACGATGAAGATGGAAACATCTCTGAAGACAGCATGCGTTCTGATGGAATGGACAATCGTGCCCACGACTCCGTCCCAGATCGCTCTGACAACGAGATGTCCGACTTGGATCCAGGGCACTTCTTGGATCGAGCACGCGCACTTATTCGGGAGCACACCATGGTGACGGCGGGGGACAAACCCAAGCGTGATGGGTCACGAGGAAAGAGCCAGGGACCAACCTCCATGCATGCAGAGGGCAAACAGCTAGCAGAGACGCTAAAACAAGAGCTCAATACAGCAATGTCCCAGGTAGTGGACACCGTGGTGAAGGTCTTTGCTAAGCCACCACGCCCAGTTCCTCAGGTTTTCCCACCCCTGCAGATGCCCCCTGATCGTTTCGCAGTCAATGGAGAAAACCCAAACTTCCATACTGCCAACCAGCGCTTGCAATGTTTTGGTGATGTCATCATTCCTAATCCCCTGGACACTTTTGCTAGTATGCAGGTGCCCAACTCGAATGACCAAACAGAGGCCCTGCCTTTGGTAGTGAGAAAGAACTCTTCAGATCAGTCCGGGTCTCTTCCCACACCCGGGGGTCACCACCACCCTTCCCTGCACCCCTCACCCTTATCTTCCGCAATGGGCTTTAGTCCTCCCTCTTTCCGCCATCCTTTCCCCCTTCCTCTAATGGGCTACCCTTTCCAGAGCCCCTTAGGTGCCCCAACAGGGCCTTACCCAGGAAAAGACAGGTCTTCTCCCGAGTCTCTGGATTTGTCCAGAGAGACCACCAGCCTACGGACCAAGATGTCGTCCAACCACCTCAGCCACCATCGTTCCATCTCACCAACGCACCCAGGGAATGAAGGCTTGTCCTTGTCCCTCATCAAGTCAGAGTGCGGAGACCTTCAGGACATGTCCGACATCTCTCCATATTCAGGAAAGGGGCTTTCTCCGAACCATCTGAAGAAGGCCAAGCTGATGTTCTTCTACACACGCTACCCCAGCTCCAACATGCTGAAGATGTTCTTCTCAGACGTGAAGTTCAACCGCTGCATCACATCACAGCTGATCAAGTGGTTCAGTAACTTCCGTGAGTTTTACTACATCCAGATGGAGAAATTTGCTCGGCAGGCCATCAACGACGGTGTGACGGGGGCAGACGAGCTGAGCGTGAGCCGGGACTGCGAGCTTTTCCGCGCTCTCAACATGCACTACAACAAGGCCAACGATTTTGAGATCAGGTCAAAGACAAGGTTTATTGTGATTGCAGCTGGAGCCGAATGTCCAGCGTTCAGTGTAACGTTTCTCGTTCAACGGGATGTTGTTCTTTTGAAGTTAAGTCTAGCTCCAGGACAAGCAGTGATAGAGAGAGAAACTGAGAGGGAGTGGGTGGGAGTCCTTGATTTGTATGGCAGTTATCAGGAGAAGGCTGCTGGCCATTGTCTGAGGGGGTGGAAGACTTATAAAAGCGTGAAAAAAATAGGGGAGAGGGAAGTAGACTCTAAAAGAGGAACAGCTCAGCAGGTTCCGGAGCGATTCCTGGAAGTGGCGCAGATCACGTTACGGGAGTTTTTCAATGCCATTGTGGCAGGCAAAGATGTTGATCCTTCCTGGAAGAAGGCCATATACAAGGTCATCTGCAAGCTGGACAGTGAGGTCCCAGAGATTTTCAAATCTCCAAATTGTCTGCAGGAGCTTCTGCATGAGTAGTGATTTGAATTGCTTACCAAGTATCATCCCTTCTTTTCGAGAAATCTTTACAAAGTAAGAGGTAGCATTCCTATTTTTAAGTCCCGGCTACTTTTGAATGACTTAGCTGTTAATTTTTTTTTTGTGCTTCTTTTTGGGAAAGTCTATAAAATTCTTGATTGTTTTGACTGTATTCAATCCTTACCCCCTTTTCCATGCCTTTAAATTGGGCATTACTATGTTTACCAGACAAAATGGTTAACAAATGGAACTGACACCCTGAATTTCTCTCTTTTATTGGTCATTTTTGTTGAGGGCTTTGTTTTATCCCCGGATGTTTGCAATGTGTGATGGTTTTACTATTGCTGAATAAGACTTGCATTTGTAGCTTGTATAGATGTAATTATTATTTATGATTAATATAATTATTACCATTAATGTTATTCATGCTTGCTACAAAAAAAAGGAAGAAAGGAAAAGAAAGACAAAAAATTGACATGTGGTATTCTTGTTTCTCATGGCAATGCTACAGAAA

Function

symbol description
prox1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including lymphangiogenesis; negative regulation of DNA-binding transcription factor activity; and neuromast development. Located in nucleus. Is expressed in several structures, including digestive system; mesoderm; nervous system; pleuroperitoneal region; and trunk vasculature. Orthologous to human PROX1 (prospero homeobox 1).
prox1 Enables several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; nuclear receptor binding activity; and protein domain specific binding activity. Involved in several processes, including animal organ development; lymph vessel development; and regulation of transcription, DNA-templated. Located in cytosol and nucleoplasm.

NR:

description
homeodomain protein

GO:

id name namespace
GO:0001709 cell fate determination biological_process

KEGG:

id description
K20211 PROX1; prospero homeobox 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000062_03846495_03878349.mRNA True 4600 mRNA 0.44 9 3844902 3878863

Neighbor

gene id symbol gene type direction distance location
CI01000062_03608961_03614541 NA coding upstream 229449 3608843 ~ 3615453 (+)
CI01000062_03575943_03597236 EFR3BA, EFR3B coding upstream 246337 3575943 ~ 3598565 (+)
CI01000062_03487108_03498318 ECT2L coding upstream 346021 3487108 ~ 3498881 (+)
CI01000062_03480918_03482967 CCDC28A coding upstream 360793 3480918 ~ 3484109 (+)
CI01000062_03422781_03423731 TMEM121A, TMEM121B, TMEM121 coding upstream 420153 3421906 ~ 3424749 (+)
CI01000062_03904672_03920716 NA coding downstream 25124 3903987 ~ 3920753 (+)
CI01000062_03927588_03933449 NA coding downstream 48725 3927588 ~ 3934032 (+)
CI01000062_03957204_03981763 KCNK2 coding downstream 77929 3956792 ~ 3981912 (+)
CI01000062_04000935_04003736 NA coding downstream 122072 4000935 ~ 4004205 (+)
CI01000062_04010092_04010726 NA coding downstream 130448 4009311 ~ 4010748 (+)
G260795 NA non-coding upstream 5456 3838254 ~ 3839446 (+)
G260796 NA non-coding upstream 7175 3837320 ~ 3837727 (+)
G260884 NA non-coding upstream 15242 3829440 ~ 3829660 (+)
G260883 NA non-coding upstream 15525 3829103 ~ 3829377 (+)
G260882 NA non-coding upstream 16566 3827796 ~ 3828336 (+)
G260892 NA non-coding downstream 7774 3886637 ~ 3886931 (+)
G260902 NA non-coding downstream 104772 3983635 ~ 4005133 (+)
G260908 NA non-coding downstream 120569 3999432 ~ 4000653 (+)
G260905 NA non-coding downstream 127785 4006648 ~ 4008187 (+)
G260901 NA non-coding downstream 156516 4035379 ~ 4070400 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location