G283006


Basic Information

Item Value
gene id G283006
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 4471619 ~ 4472426 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU320743
GAACTGATGCCCTTTCATTATTGCACTGCTAGCTGCAGCTCCCACAGTAGTGCAACAGGGAAAGAGTGTCAGGCAACAGACAGCAAGCACTGAAGGGAACAAGGGGTTCAAAAACATGCTCACATGAATCTCATTCTTCTATATCATATACACAAACTTTTATTTATTTAAAGGGTTTTGTTTGCTAAATAGCCAAATACATGCAAGCTATTTCAGGAGGTCTAAACAATAAAACACTCATTCAAACAGCCTTTGAAAATGCACCTGCCAGTCTCTGACCCACACAAAAAAAATGCTTTCCCATCCCTTTCTTAATGACCATTTTTCAGACATCTACACAGCTTCCACATAATACTGCATACACAGACTCACTCAAGGTTAACCTATTGATTATGGGATCACGATGACATGAACTAAATTATAACAATTTGAAACCACATAGAGAGCTAGACTTTCATACAAACCAGTCGCATAATGAAATGTTGCATTTAACTTGCTTTGCATTGATTTAATGTTGAACTGCATGGTTGGTTGTCCGAGCATTTAACGTATTATAATAAAGGATATTTGGTTGATATGTTCAGCTGTCAATAGTAGGGGTATAACGGTACACAAACATGATGGTTACCTCGGTTTTAAAGTCACGGTTTGGTAGGGGTTCGGTACAGCAGGGGGGAGAAAACTAAACATAAAATTGCTTTTTTTTTTTTCCTTCTTTTTTTTTTATTAAACTGTGTTTTTCAAACAAATGTGTCTCTCTGTGTTTAATAAATTTAATTATAAATACAATTTTATTAAGGATTTAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU320743 True 808 lncRNA 0.35 1 4471619 4472426

Neighbor

gene id symbol gene type direction distance location
CI01000071_04464134_04466967 SDF2L1 coding upstream 4386 4464134 ~ 4467233 (+)
CI01000071_04443263_04450257 GM10705, UBE2L3, BB_R111_JSM90EE7F, UB2L3, UBE2L3B, UBE2L3.S, UBE2L3A coding upstream 20359 4443186 ~ 4451260 (+)
CI01000071_04228627_04229463 PURBB, PURB, PURBA coding upstream 242048 4228627 ~ 4229571 (+)
CI01000071_04206342_04211122 NA coding upstream 260486 4206211 ~ 4211133 (+)
CI01000071_04163270_04188267 MXD1 coding upstream 281046 4163270 ~ 4190573 (+)
CI01000071_04500188_04515251 TOP3B.L, TOP3B coding downstream 27762 4500188 ~ 4515251 (+)
CI01000071_04518557_04528364 NA coding downstream 46131 4518557 ~ 4528452 (+)
CI01000071_04534337_04569325 MAPK1.S, MAPK3, MAPK1, MAPK1.L coding downstream 61911 4534337 ~ 4569325 (+)
CI01000071_04584728_04585430 NA coding downstream 112302 4584728 ~ 4585721 (+)
CI01000071_04589416_04602399 YPEL2A, YPEL2B, YPEL1, YPEL2, YPELD, YPELC coding downstream 115898 4588324 ~ 4602495 (+)
G283005 NA non-coding upstream 55 4471122 ~ 4471564 (+)
G283003 NA non-coding upstream 1177 4469605 ~ 4470442 (+)
G283004 NA non-coding upstream 2285 4469119 ~ 4469334 (+)
G282992 NA non-coding upstream 35063 4436258 ~ 4436556 (+)
G282991 NA non-coding upstream 35421 4435924 ~ 4436198 (+)
G283007 NA non-coding downstream 270 4472696 ~ 4472902 (+)
G283008 NA non-coding downstream 483 4472909 ~ 4473592 (+)
G282807 NA non-coding downstream 57680 4530106 ~ 4531307 (+)
G282817 NA non-coding downstream 64677 4537103 ~ 4617741 (+)
G283025 NA non-coding downstream 155815 4628241 ~ 4628538 (+)
G282080 NA other upstream 1415088 3056084 ~ 3056531 (+)
CI01000071_02815324_02834097 NA other upstream 1643015 2815127 ~ 2835525 (+)
CI01000071_01374449_01376813 NA other upstream 3093949 1373996 ~ 1377670 (+)
G280443 NA other upstream 3549523 905217 ~ 922096 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 other upstream 3668302 791346 ~ 803317 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029924 dre-mir-130b non-coding NC_007116.7 CM002889.2 13299331 ~ 13299414 (+)
rainbow trout (Oncorhynchus mykiss) G1020847 NA non-coding NC_048575.1 CM023229.2 78608941 ~ 78609483 (+)
eurasian perch (Perca fluviatilis) G109656 NA non-coding NC_053121.1 CM020918.1 36758212 ~ 36758838 (+)
bowfin (Amia calva) G117557 NA non-coding CM030135.1 CM030135.1 15627339 ~ 15627719 (+)
tiger barb (Puntius tetrazona) G99598 ppp2ca,LOC107750370,LOC108439805,LOC107594878,LOC105026079 non-coding NC_056712.1 CM032081.1 13313874 ~ 13314341 (-)
mexican tetra (Astyanax mexicanus) G323979 NA non-coding NW_019172901.1 APWO02000130.1 225393 ~ 225827 (+)