CI01000072_00338411_00351144


Basic Information

Item Value
gene id CI01000072_00338411_00351144
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 337071 ~ 351288 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_00338411_00351144.mRNA
ACTTAAAAAAACATGCAGGAATCACACAGGCTGTATACACAGGGAACCATGTACATCATTAATCCTGCAACTTTAGTGGCTGGTATCTAATATTGATGTTGGAATCTGATGAGGTTCACAAGTTCCGGATATTGTCATATTCACTGCATTAAATTCAATTAAAAAAATACAAAAATGCATACTGTGCATAACGTTCTTCATGACGTTCCACACCCGTAAGACTTTCGTTCATCTTACAATACAAATGAAGATCTTACATGAAATCTGTCTGTCCCTCCATTGACAGCTACGCAACGACCACTTTGAAGCTTCAAAAAGTTCATAAAGAGATGGTAAAACTAATCCATATGAATCTATTGGTTTCGTCCAAATTTTCTGAAGAGACTTGATCACTTTATATGATGAACAGATTGAATTTAGGCTTTTACTAACATGTTAGTTGCTGTGTTCGCAATCGCCCCATACTCTCATTTGTGACCTTTTCAGTTCCCGCTGGATTTCATCCTCCGCATATAAGCTTAATAATGCCTGAACCTCATCACTGGTCCATCTTTTGTCATTTTTAAACTCCTTTGTTGATTTGAATAGCAAATAACTCTTACTGCATGCACCGCAACAGACTTAATAATATACTTTATAATAAAATAAAATGCTGCGTGGAGTCATCCAATCGAAATGCTGTGTGAACTCAACCAATCAGCATGTCCAGTGCCCAAGTCCCACCCCCGAAAATTCCTGAATTTTTAGCTGGAACTTCATTTAGACCCAAGTACTACCCCAATGTCCCTAATTCCTGGGGAAAGGGTTAGTGTGAAAGTGGGAAAGTTAGTGCGGTGGAAACACGGCTTTACTGAGGTAAATGCTGCACAATGGTATCGCTATTTTACAATGCAAGACATTTAAAGTTTACCTAAAGTATACTTGCAATAGTTCCACTTTAGCACAAACAAATATACAACAGTTTATCTTTAGTTGGACCTCAGCACTACTTCCTCACAATTAAAGTGCATTAAGTACAGAATTTGTTGTTCCAATTTAGCAGACTTTAAGTATACCAGTTTACTATACCAAAAGTACAATTGCAAGGTATTTTTATTTAGCACATAAATATGTAAATGTATTTCTAGTATACTTAGCACAACAAAAATATTTCAAATAAGTTTTAGTATTTTTTATTTATTTTTTTTTTTACTAGGGGCATTTAATAATATAATAACTAAGACAAGTGTACATAATAAATAAAATAAAATATTCATACATTTAATGAATATTTAGTATTGTATCTTTCTACTCAGATATTTCAGGAGATTGGGGCTGTTCAGAGACTAAAAAGGATCGTCATGTACTCCAGTAATGAGACTGTCTGCTGTCTGGCTAAGCGGGCCTTAACAATGATGAGCGAGGACGTCCCGAGGCGTATCCTGTCATCTGTACCCAACTGGAAGAGCGGAAAGGTGCAGACCTGGCCGCAGCAGATTGGCTTCAGTGCATTCAGTGAACGGTTTCAGGTTTGTACACAGCTCCCATTTCCTGTTCAGCTGACCAAGATAAAGACCTACGCCAGCTACTCCACATGTGACCCCAATAACCTGGCAGACTGGCTGGCCGATGTAGACCCACGATTCCGTCAGTACACACCAACAGTTGACTACCATGTAGAGAATGGCATCCATCGTGCCAAGATCCTTTCTACCGCCCGCCGCCCTGCTAAACCCTGCTTAACTGATTCCCAGCCCACGGGCCCTGATGTGTTCATCAGCTACCGTCGCACTACAGGTTCACAGCTTGCCAGCCTACTGAAGGTGCATCTACAGTTACGTGGTTTCAGCGTCTTCATTGACGTGGAGAAACTGGAAGCCGGGAGGTTCGAGGAGAAGCTGATCACGAGTGTGCAGCAGGCACGAAACTTCATCTTGGTGCTGTCAGCCAATGCGTTGGACAAATGCATGGGTGACGTGGCAATGAAAGACTGGGTTCATAAGGAGATAGTCACGGCTCTGAATGGGAAGAAGAACATCGTTCCTGTCACTGATAACTTTGTGTGGCCTGATCCGGCCTCTCTGCCAGAGGACATGAGCACCATTCTCAAATTTAATGGCATTAAGTGGTCCCATGAGTATCAGGAAGCCACTATCAACAAGATTCTGCGCTTCCTCAAGGCATGCCCCAGCCAAGAACAACCAGATGCTGCAAAAACAGACAAAAAAGAGCCAGAAAAGGAATAATGTTGCATTAAGTAATTGCCGTCATGTAACCAAAACACACCTGTTACCCCTCAGAGGCCAGTGTTTCCTTTGGTTGTATGCATGTAGCTGGTCTAGATAGATTACTGTTGAATTTTCTTGGGAGAAAAAGAT
>TU321805
TTCCCAGCCCACGGGCCCTGATGTGTTCATCAGCTACCGTCGCACTACAGGTTCACAGCTTGCCAGCCTACTGAAGGTGCATCTACAGTTACGTGGTTTCAGCGTCTTCATTGACGTGGAGAAACTGGAAGCCGGGAGGTTCGAGGAGAAGCTGATCACGAGTGTGCAGCAGGCACGAAACTTCATCTTGGTGCTGTCAGCCAATGCGTTGGACAAATGCATGGGTGACGTGGCAATGAAAGACTGGGTTCATAAGGAGATAGTCACGGCTCTGAATGGGAAGAAGAACATCGTTCCTGTCACTGATAACTTTGTGTGGCCTGATCCGGCCTCTCTGCCAGAGGACATGAGCACCATTCTCAAATTTAATGGCATTAAGTGGTCCCATGAGTATCAGGAAGCCACTATCAACAAGATTCTGCGCTTCCTCAAGGCATGCCCCAGCCAAGAACAACCAGATGCTGCAAAAACAGACAAAAAAGAGCCAGAAAAGGAATAATGTTGCATTAAGTAATTGCCGTCATGTAACCAAAACACACCTGTTACCCCTCAGAGGCCAGTGTTTCCTTTGGTTGTATGCATGTAGCTGGTCTAGATAGATTACTGTTGAATTTTCTTGGGAGAAAAAGATATAAATGTAACT

Function

NR:

description
sterile alpha and TIR motif containing 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_00338411_00351144.mRNA False 2357 mRNA 0.41 6 337071 351276
TU321805 True 643 TUCP 0.47 4 349124 351288

Neighbor

gene id symbol gene type direction distance location
CI01000072_00315525_00322937 SARM1 coding upstream 14002 313057 ~ 323069 (+)
CI01000072_00295802_00308710 NA coding upstream 27514 295201 ~ 309557 (+)
CI01000072_00275132_00275592 NA coding upstream 59803 273980 ~ 277268 (+)
CI01000072_00245767_00246460 NA coding upstream 90390 244444 ~ 246681 (+)
CI01000072_00196391_00200157 NA coding upstream 136566 196391 ~ 200505 (+)
CI01000072_00368515_00382013 FOXN1 coding downstream 17239 368515 ~ 382719 (+)
CI01000072_00400359_00403220 CRYBA1A, CRB12, CRYBA1, CRYBA4 coding downstream 48540 399816 ~ 403514 (+)
CI01000072_00404877_00406183 DHRS13A.3, DHR13 coding downstream 53601 404877 ~ 407092 (+)
CI01000072_00441183_00448301 NA coding downstream 89350 440626 ~ 448472 (+)
CI01000072_00453946_00487772 NA coding downstream 102465 453741 ~ 488634 (+)
G283925 NA non-coding upstream 36745 298283 ~ 300326 (+)
G283903 NA non-coding upstream 74240 262612 ~ 262831 (+)
G283797 NA non-coding upstream 93162 240653 ~ 243909 (+)
G283793 NA non-coding upstream 115033 221802 ~ 222038 (+)
G283951 NA non-coding downstream 28640 379916 ~ 380158 (+)
G283927 NA non-coding downstream 289153 640429 ~ 642060 (+)
G284111 NA non-coding downstream 294395 645671 ~ 646059 (+)
G284117 NA non-coding downstream 311317 662593 ~ 662875 (+)
G284121 NA non-coding downstream 316497 667773 ~ 668011 (+)
G284742 NA other downstream 1630254 1981530 ~ 1985140 (+)
G285428 NA other downstream 3618981 3970257 ~ 3976214 (+)
G286470 NA other downstream 3817828 4169104 ~ 4175651 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other downstream 3873562 4224789 ~ 4268148 (+)
CI01000072_04338747_04342064 SDHD other downstream 3987443 4338719 ~ 4343266 (+)

Expression


Co-expression Network