XLOC_011042 (tmem176l.2)


Basic Information

Item Value
gene id XLOC_011042
gene name tmem176l.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 46639772 ~ 46645396 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021555
ACTGTGGACCGACTGAGACGTGCCATACAGACGTGCCATAAAAGAAACTAATAAaagtttggaactacttgagaTAAAGAAACGGGAGATTCGGCGGTTGTTACCTGTGGGAAGTTCATCACACCTGTCTACAACATGCCTCTGACCATATCTCAGGACGAAGGTTTGACgattgtcatggtcaactcaaACCCAAAGAGTAAATGGCCCGTACTGTGCCAGATTCTGGGTTATCTGTGCTACAGTCCAGTGTGCTCTGTGTCTCGGATTATGATCGGAGAGCTGGCGAACATCCACATTGGTCTCGGGATTGTGCAGATGATCATTGGCGTCCTCAATATTGCAATGGGGACTTTGTTAATGTGCCTTGGATATTATGAAAACATGTTTTACATGGGCCAGGGACCCTTTTGGATTGGTGGTGTGGTCCTTGGAATTGGCGTTGTCTGTATTCTTGTAGCGAAGTTTCCCTCTTCTTGTCTGCTGATCATAGGAATGCTATTAAACATGATCAGCGCTGGACTGGCCATCGCTGCTATTGTGTTGTATGCAAAAGACCTTTCATATGGTCATGATCAATACTGTcgatcttattattattatcaatcttATGAGAGTAGAACACCGACCCCTGAAGAGAGCCAGAGACAGGTGATCTGTGAGTACTACAACAATCTCAATAAgATGATCTGCGGAGGTCTGGATATCATGATGATCGTGCTGTCGGTGCTTCAGCTCTGCGTGGCCATCAGTCTCTGTGTTTTGACTTTGAAAACTCTGTGCAAGAAAACCGAGAATGCAAAGGAGGATCTAGAACATGGAAAGCCACTTCTGGATGATGACATTGCTGGTGCTGCATGATAAAATGAGCACACAAAATAATCGTAGTTATTTTATATTCTTTGCGAATGTCATATTCTACTAAAATGCAGATTACTTTACTGATTAAATGAGATTAATTACACATATTTTGCTTTTTATAAAAGTGGTGTTACCACTGATCTGTCTCTCTTTCTGTATAAACAAAGATCTGTGCGCATTTCAGTGTCTTTTCAATTTTGTTAATACTTTGGGCTGCTttcttataattatataaataaatggctTGAGCAATTG
>TCONS_00021556
ACTGTGGACCGACTGAGACGTGCCATACAGACGTGCCATAAAAGTAAAGAAACGGGAGATTCGGCGGTTGTTACCTGTGGGAAGTTCATCACACCTGTCTACAACATGCCTCTGACCATATCTCAGGACGAAGGTTTGACgattgtcatggtcaactcaaACCCAAAGAGTAAATGGCCCGTACTGTGCCAGATTCTGGGTTATCTGTGCTACAGTCCAGTGTGCTCTGTGTCTCGGATTATGATCGGAGAGCTGGCGAACATCCACATTGGTCTCGGGATTGTGCAGATGATCATTGGCGTCCTCAATATTGCAATGGGGACTTTGTTAATGTGCCTTGGATATTATGAAAACATGTTTTACATGGGCCAGGGACCCTTTTGGATTGGTGGTGTGGTCCTTGGAATTGGCGTTGTCTGTATTCTTGTAGCGAAGTTTCCCTCTTCTTGTCTGCTGATCATAGGAATGCTATTAAACATGATCAGCGCTGGACTGGCCATCGCTGCTATTGTGTTGTATGCAAAAGACCTTTCATATGGTCATGATCAATACTGTcgatcttattattattatcaatcttATGAGAGTAGAACACCGACCCCTGAAGAGAGCCAGAGACAGGTGATCTGTGAGTACTACAACAATCTCAATAAgATGATCTGCGGAGGTCTGGATATCATGATGATCGTGCTGTCGGTGCTTCAGCTCTGCGTGGCCATCAGTCTCTGTGTTTTGACTTTGAAAACTCTGTGCAAGAAAACCGAGAATGCAAAGGTAATGCATCAAACACACTGTTCAATCCGCTGT

Function

symbol description
tmem176l.2 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080829-12 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000089399

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021555 False 1116 mRNA 0.41 8 46639772 46645396
TCONS_00021556 True 807 lncRNA 0.45 6 46640136 46645396

Neighbor

gene id symbol gene type direction distance location
XLOC_011041 NA coding downstream 17329 46621203 ~ 46622443 (-)
XLOC_011040 tmem176l.3a coding downstream 19805 46596206 ~ 46619967 (-)
XLOC_011039 BX323793.1 coding downstream 51834 46583604 ~ 46587938 (-)
XLOC_011038 si:dkey-152b24.6 coding downstream 59791 46576702 ~ 46579981 (-)
XLOC_011037 zgc:174938 coding downstream 66561 46567408 ~ 46573211 (-)
XLOC_011043 tmem176l.4 coding upstream 4073 46649469 ~ 46664465 (-)
XLOC_011044 FO082781.1 coding upstream 115229 46760625 ~ 46766153 (-)
XLOC_011045 NA coding upstream 151016 46796412 ~ 46798742 (-)
XLOC_011046 NA coding upstream 160841 46806237 ~ 46810212 (-)
XLOC_011047 LO017877.2 coding upstream 552716 47198112 ~ 47245563 (-)
XLOC_010626 CR392024.2 misc downstream 25744597 20895112 ~ 20895175 (-)
XLOC_011033 NA non-coding downstream 179922 46396002 ~ 46459850 (-)
XLOC_011032 NA non-coding downstream 246487 46350228 ~ 46393285 (-)
XLOC_011031 CU469499.1 non-coding downstream 299115 46340543 ~ 46340657 (-)
XLOC_011030 BX537142.1 non-coding downstream 422863 46216808 ~ 46216909 (-)
XLOC_011049 NA non-coding upstream 657050 47302446 ~ 47304669 (-)
XLOC_011054 CR388140.2 non-coding upstream 1297747 47943143 ~ 47943257 (-)
XLOC_011055 NA non-coding upstream 1397988 48043384 ~ 48056492 (-)

Expression


Co-expression Network