CI01000112_03861399_03879738 (TEX2)


Basic Information

Item Value
gene id CI01000112_03861399_03879738
gene name TEX2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3861399 ~ 3879752 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_03861399_03879738.mRNA
ATGACCAGTCAGGGTGGTGACCATGCAGACACACTAAGCCCCCCAACTTCCTCCTCTTCCTCTTCTCGGCCCGCAGCAGCCCGTAAGGTGCAGGTGCAGCGCTCGCTCTCCCGAGATACTATTACCATACACTTTTCTGCCAAAGGAAATGAGGAAGAGGAGGAGGAAGAGGAGCTCTACAGGCTAGCTGATTCACCTTCTGGCCTTGAAACTGAAGATCAGGGCGTAGTCACAGCTCAGGAGGCCAGTGAGGACCTTCTCTCTGAAGGGCTGGGAGTGGACATGGTTACAGGACCGTCATCCCAGACCCACAGTTCAGCCTTGGCTATCCAGCACCCCTCCATTAGCCTGGCTTGCACGTCCATTTCTAGTCTCGTTAGCTCCTCATGGCCCTCTGAACAAAAGTCGACTGCCCCGGTACCTTCCACCTATTCAGCTTCCTCCAACTCATCCCCAGCCAAGTCCTCTGCCCTACCCTCAAAGCCTTTCTTCAGCCTAGTCAAGTCCCTTTCCACAGATGTGGAATCTCGTGAGGCTCCCACTGTTGCTCCCCAGTCGATAAGGCACCGGCATTTGATGAAGACCCTGGTTAAGTCTTTGTCCACAGACACTGCTCGACCCGAACAGGAGGCTTCGTTGACTCATCGCCCCCCAGATTCCCGGCTCAATCTGCACCTTTTCAAGCCTTTCACCCAAACTCGTGTTCCTGCTGTCAGTGGAGACTCCAAAACTGCTCCCTCATCCCCCCTCACCTCACCAGATAGCCGCTCCTTCTTCAAAGTTCAGGAGGTGGAGGCACGTATTGAAGACACAAAGCGCCGTCTGTCGGAGGTAATGTATGAGCCCCTTCAGCTGCTCAGCAAAATAATTGGCGAGGAAACTGGTAGTGTCAGCACTTCCACATCCACAACTGCAGGAGTCTCCTACCGGTCCAGAAACCTTTCTTCCAGCGCCTCTGAACTCTCCAACCTGTCTGCCCTCAATGGCCACTCAGAAAGCAACAATAACTACTGCATCAAGGAAGAGGAAGACCTGGAGGGCGAAAGTCCTCTTGAGGCAACTGTTGAGTTGCCTCTGCACAGGTCACCCTCGCTGGGCTTGGACAGATGTTTTATGTCAACACTTGCTCGTCAGGAAGATGAAGAGTTCTGTGAGCTCTACCCCGAAGACTTTGAGCTCTGCAATGACACAGAGTTAGATGGAGAGGGACCTCATTCATCTCAAGTCCGACGAGGGAGTACAGGGGGATGCAGTGAGGAACCAACTGAAGGAGGGGAGGAGGAGGAGGAAGAAGATGAGCCTCCAGGAGTACCCCACAACAGACTGATTCTTCTTATAGCTATAGTTTATGGTTGCTTTGTGTTGCCACTGCCTACCTATGTGTGTTGGGTGTTGACGGGAGTGGTGGCAGGTTTCATGCTGGCAATTCTGATGGTGTGGTTGTCAGCAAGAAGCAGACCTTCATGGGGCCGTCACAGCAGCTGGAGCAGAAGAGAGCAATGGAACAGGGTTCCTCTGGATATCCAAGAACCTGTCATCTACAAGGGTTGGATGAATGAGATCTACAGCTATGACCCTGAGACATATCACGCCACACTCACTCATTCAGTGTATGTGCGTCTGGAGGGCTCTGTCCTGCGACTGTCCAAACCTAACCGCAATATTCCCCGCCGGGCAACCTTCAGCGAGCTCAAACCTGATATCACCTACATTAGCCAGAAAATCTATGATCTCACTAACAGTAAGATCTACCTGGTGCCTCAGAGCCTGGCAAGGAAAAGGGTGTGGAATAAGAAGTATCCCATCTGCATTGAGCTGGCCAAGCAGGATGACTTCATGGCCAAAGCTCAGGAAGATAAGACCGAGGTGGTGGAGGAGAAGACCTCTGCACTAGGAGACAGGACTGAGACAGTAGGCACTAGTGAGGAACCTAAGAGAGCACACACACAACCTGTGCTCTACCTGTTTGGGAGGACAGGAAGAGACAAAGAGGAATGGTTCAGAAGGATGCTGTTTGCATCCAAACTGAAATTTGAAGCCAAGAAGCCCTCAGGCCTGCCTACAAGTTGTCTGGCTCAGAGCCGCAGCAGCAGCCGTGGCAGTCTGGATGAAGTGCTCCAGTCTCATCCCAGACAAAAAGACCTTGGTGCCAGTGTCAAACAGAAAGTTCTGGAATACAATGTCTACATGGCCAAATATGTCAGCCAGTCCACTGGCAGCCCCGCCACAAGCCCTGTTCAGAGTGCTGGAAGCAGTCCGGGAACCGTTAAAAAGTTTCCAGAGAGTCGAGAACAGGAGGCAGAGTCTGAGGCCTGGGTCAATGCTCTTTTGGGTCGCATTTTCTGGGACTTTCTGGGAGAGAAATACTGGGCAGATGTGGTGTCCAAAAAGATCCAGAAAAAGCTGAGTAAGATCAGGCTACCGTACTTCATGAATGAGCTGACCCTCACTGAGCTGGACATGGGAATATCCATTCCCAAGATCCTCAGCTCCTCCAAACCATCTGTAGATCACAGAGGCCTTTGGTTTGACTTGGAGATCTCGTACAACGGTTCCTTTCTTATGACTCTTGAAACCAAGATGAACCTGACCAGACTGGGAAAAGAGGGAGAAGGCTTAGGAGAACAGGGAAAAGAAGGACCCAGACCACGCACTTACTTCTTGGCCGACAGTGATGAAGAATCATCGAGTGCAGGATCTTCTGATGAGGAAGATACTGCCGAAGTGCCTGAAATTACAGGAGTGGAAGGTTATGTTGGGGGACACCGACCCAGCAAAATCATGCGCTTTGTGGACAAGATTGCCAAGTCCAAGTATTTCCAGAAAGCCACAGAGACTGAGTTCATTAAGAAGAAGATGGAGGAGGTGTCCAACACCCCACTGGTCCTGACGGTTGAGGTTCAGGAGTGTCAAGGAACACTAGCTGTCAACATTCCACCACCTCCAACAGACAGGATATGGTATGGTTTCAGAAAACCTCCTCGTCTTGAACTGAAAGCTCGGCCTAAACTGGGCGAGAGAGAGGTTACTTTTGCTCATGTGACAGACTGGATAGAAAAAAAACTAGATCAGGAGTTTCAGAAAATATTTGTAATGCCAAACATGGATGACGTCTGGCTGCCTATCATGCACTCTGCCATGGACACGCGTTCCAATGCCAATGCCTTGAAGGACGAAGAAACCTTGGACCATGAGGAATCCCTTGATGACATGTGAAGATATGTTGCTGT

Function

symbol description
tex2 Predicted to enable lipid binding activity. Predicted to act upstream of or within lipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human TEX2 (testis expressed 2).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_03861399_03879738.mRNA True 3230 mRNA 0.51 11 3861399 3879752

Neighbor

gene id symbol gene type direction distance location
CI01000112_03759872_03772553 AXIN2 coding upstream 88417 3759803 ~ 3772982 (+)
CI01000112_03653384_03730444 NA coding upstream 130951 3653384 ~ 3730448 (+)
CI01000112_03608324_03621681 NA coding upstream 239711 3608324 ~ 3621688 (+)
CI01000112_03571702_03574425 NA coding upstream 286699 3571380 ~ 3574700 (+)
CI01000112_03344466_03359943 CYTH3, CYTH3A coding upstream 501103 3344466 ~ 3360296 (+)
CI01000112_03896750_03921778 ERN1 coding downstream 16998 3896750 ~ 3923164 (+)
CI01000112_03932803_03933881 NA coding downstream 53051 3932803 ~ 3933912 (+)
CI01000112_03933921_03937412 NA coding downstream 54169 3933921 ~ 3937708 (+)
CI01000112_03956622_03957718 MAFGA, MAFGB, MAFG coding downstream 76870 3956622 ~ 3957867 (+)
CI01000112_03978196_03991078 PCYT2, PCY2 coding downstream 98444 3978196 ~ 3991078 (+)
G329413 NA non-coding upstream 318373 3533229 ~ 3543026 (+)
G329381 NA non-coding upstream 472948 3388250 ~ 3388451 (+)
G329380 NA non-coding upstream 474029 3387157 ~ 3387370 (+)
G329373 NA non-coding upstream 477021 3376281 ~ 3384378 (+)
G329339 NA non-coding upstream 554520 3306588 ~ 3306879 (+)
G329512 NA non-coding downstream 92364 3972116 ~ 3973883 (+)
G330383 NA non-coding downstream 224486 4104238 ~ 4104501 (+)
G330402 NA non-coding downstream 268767 4148519 ~ 4148864 (+)
G330404 NA non-coding downstream 270235 4149987 ~ 4150244 (+)
G330396 NA non-coding downstream 275647 4155399 ~ 4157165 (+)
G329194 NA other upstream 929510 2920254 ~ 2931889 (+)
G329125 NA other upstream 1243248 2617704 ~ 2618151 (+)
G328456 NA other upstream 2628281 1232022 ~ 1233118 (+)
CI01000112_05076817_05101845 NA other downstream 1204968 5076817 ~ 5101845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location