CI01000299_04370401_04385955 (RADIL)


Basic Information

Item Value
gene id CI01000299_04370401_04385955
gene name RADIL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4370401 ~ 4388020 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_04370401_04385955.mRNA
AGCGACTACCCAGGAGCAGCGCCGACAAATAAAACCAGCAGGTAAGGCATTCCGAGCATACCAACCATACATTTCTCTATATTGATGTATGTTTGACACCTCACTGTTACTGTACAGGTAGACGTTGTCGCATTCCATGACAGTGACTGGGCGGACCAAAACTGTATCCCACCGGCCCGCAGAGCTAATTTAACATATGAACAAGAGGAAATACTGGCAAATGTCAATAACAGGAGTCAAGCGAGCGGCTTGTGAGGGATCAGAGCTCTGAGACTGGCTGGCGGAGCCCCGTTAAGACGCACAAGCGGATTAGGACTCGCGAGCAGGTGCCTTTGTTGGCTCGCGCCGTTGCTAGTGGAGACCCGCAGTAGCCCGACGCGCTTCTTTAAAATTAATGCCTCCAAATGAGAGTCTCTTCGGCACACGGGGAATAGCGCGCGCTTGACAGGTAAGAACTATTCTGCAACCTTGTGTTTGATGCTTTTCGTAAGTCTTTTCAAGAAACTTTAGTTATTGTGCGTCAGTTATAAAGTGCTGATCTTAAGCACGCGCAGTTACAATACAGTATATAGTGTAACATGTTTATGAAGGTTAAATTATTCATTCTCATTTAATGTCCTGTGCCTTTAAGAATCATATATAACGTTTTGTTTAAATAATTGTGCGCAGGACAGGACGCAAGAAGGGAACACGTGAAGACTTTAGATGTACGCAGTATACCTGTAGACTGATAGATTATTTAAATGAGGCTCAGCATGTCAACTGCATCAGTTTGTGAATAGGCTTCACGAGCGGACGGTGAAGTATTTTCACGCACGAGCAGATGGTCTCCGTTTAGACTGCCGAGTAGTGAGGATTTTAGCTGATGCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCACACACACACACACACACACACACACACACACACTGTTAGAAGGTGTTTCTCATGTCTGCAGCATTGGAGAGACATCTCTGCAGTCTATCTATCTATCTATCTATCTATCTTTCTATCTATCTATATTTGTCGTTCTATCTATCTATCTGTCTGTCTATCTATCTATATTTGTCGTTCTATCTATCTATCTATCTATCTATCTGTCTATCTATATTTGTTGTTCTATCTATCTATCTATATTTGTCGTTCTATCTATCTATCTGTCTATCTGTCTGTCTATCTATCTATATTTGTCGTTCTTTCTATCTATCTATCTACATTTGTTCTATCTATCTATATATCTAGATTTATCTATCTATCTATCTATATTTGTCGTTCTTTCTATCTATCTATCTATCTATCTATCCTTCCATCCATCCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATGTCATTCTATCCATCCATCATCTATCTATCTATCTATCTATCTATCTATATTTGTCGTTCTATCCATCTATCTATCTATCTATCTATCCGTCCGTCCGTCCGTCTGTCTGTCTATCTATCTATCTATCTATCTTTGTCGTTCTATCTATCTATCTATCTATCTATCTATCTGTCTGTCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTTTGTCGTTCTATCCCATCCATCCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCTCTAATCACTGTGTGATGATGAGCTATTTTAGTTTTTCCAATGTAAAGTAAATGCTATTGTTCTTTACTGGGTTATTGAATATTGTAAATTACTGTAACATACTGTCCAGAACTATTCTCATAGTTTCCATCAAGCTGTTTTTCCATGACATACTTGGCAACATCCCTGTTTGCCTCACAAAAATTCAGCCTTGCCCATCCTGTCTGTTTCTGTCTGTCTCTCATCTGTATCTCTGCTTGTACAGTACTGCCATGTGCCCCTGAATGCAATATTATATTAGTTGAAATGACAAGCTCACTATATCCTATAGCTTAACTCTGTTGCCAGTTGTTACAATTTGTTGTTTTCTCAGTTCTAGGGGTTTTTAATCAATGCACTTTCCGGCACCATGTTCTACGGTTCCTCATCTGCCAGCATGTCTCTGCCATCCAAGAACCGCCTGAAGCGTCAGAGTCGCACTTTTACGCAGGTTCTGTACCGGACACTGAGTTATCGGGATCGTCGCTCTGTGACCGACCTACCTGAGCAGGTACGGGACGATCCAGCTGAGCTTTCCACCCAGTCATCTGCACCAGGTGTGCTGAAGATATTTGGTGATGAAATCAGCGCTGGCGCTAACTACAAAAGCGTCCTTGCCACACCTCGTTCCAGCGCCCAAGAGTTGATCAAAGAGGCGCTTGAGCGCTACTCTCTAAACAAGGCCTCGGCCTGTAGCTATGTGTTATGTGACGTGATTGGACGGTTCGAGGGCCCAGAGCGACGGTGGCGGACTGAATGTCTTCGGGCGCTCGGGAACAACGAAAAGCCCCTCCTCTTGCAGGACCTCTGGAAGCCAAAGGAGGGTTACTCTCGTCGCTTTGAGCTCAGACGAAGAGCTGAGGTCGAGGAACTGGCAGCAAAAGAGAAGGACACAGTCACTGCAGGGACCCACACAAACTCCCCTGTGCTATCTTCAACCTTGAGTAGAAGCGGGCATGGTAGATGCCATCGGAGCTCCCCCCGGGGCTGGCGTTTGATACAGCCCTGTACAACTATTGTAAAAGATATCAATGCTCAAGCGAGGAAGCTACAAAGAAACCGTGCTAAAGGAACAATGACACTCCAGCACGGCTCCTCATTTTGCCGCAGCCTCAGTGAAACCAGCCTTAACTTGGTGGGACTGCCTGGTGAGGAACCTAAGAGGTACTACTCCACCCTCCCAGGGCCAATCAGAACACGCTCCACACGGGACGCTGAGATCCGTAAAGATGGTGGAGGAGTTAAACACTCTCTCTACCAATCTCCACACTTGCTGCTCCTTCAAGGGTACAACCAACAGGATTGCCTGGTTTACCTGTTGAATCGAGAGCAACACACAGTTGGTCAGGAAACAGCATCAGCACGGCCAAATATCTGCCTGTCATCTCCGGATGTGCTTCCACTTCACTGCCGAATACGTCGTGCTGTGCAACGACGTTCTTCCTCGGACCAGCGGTTACTCCTGGAACCTGTCGCCCATGGCAATGTTCTGGTTAACTTCATGCGTATTGAGCGGCCCACTCCACTACGTCATGGGGATTTGCTGTCCTTTGGTGCTCATTACATCTTCCTGTACAAAGACCCGCTGAGTGCGAAACCTCTTCCTGCCCAGACTCTCACTCGACTCCGGGCGCTGGCCCGACTCTGCGACAGCGAGTCGGGGGGTGTGCCTGAGAAAGGAGAGGCATGTCGTATGTGTGGGGCTGTATTACATGAACCAGTGGCGTCTCGGCGCAGCTCTAAGGCTCCGGCGCGAGGTGCACAGAAACGAAAGCTTGCATTGGAATTTGAGCGGGCTCACGAGGACGCGCTGGTGAACCGGGTGCTGACACTTATTGAGCCGAGCGGGGATGACCACAAGCTGACACCAGCATATTTGCTTTGTCTATGCATCAAGCACTCAGCTAATACATTTCCACCTGGCAGCTTCGGTAAACTACTGCTGAAAATTGCCAAGAGGATTCAGACCATAGCATGGGAGAAGACAAAGGAGTTGGCACAGAAGCAAGCTCAGCACATCTCAGACCTAGTACCTGATCTCCAGTTCATTTTCTTCTGGATGTCCAATGCCATCGAAATACTGTATTTTATCCAGCAGAAGTCTCCTGCGTACATGCAGACTATTGAGCTGATGGACGATAAAGCAGGATCTAAAGAATCTCTCCTCTCAGCAACAATATCAGCAAACGAAGAGGCGATGACCATACTAGAGGAAGTGATCATGTACACCTTTCAGCAGTGTGTCTACTACATCACTAAGACTTTGTACGTTGTGATGCCGGGCCTGTTGGACTGTAACCCGTTTGGGACGGAGTCTTCATCAGAGCAGTGCCGGCGCGCTGCTGGAGTGTGTGTGTGTGCTGTGTGTGTGATGCCAGAGGCGGTTCGCAGGGTGGTGAGTGTGTTTCAGACTACATCAGACCTGCTGCAACAGTACCAGGTTCATTCAGAGATTCAGAGTCAAATGTTCGCCTACCTCTTCTTCTTCACCAATGTCTCACTCTTCAATCAACTCATCGATAAAGGCCCCGCACGCGGCTGGTTTCAGCGTTCTCGGGTCCTGCAGATCCAGGCTAGTGTGAAGATGCTGATGGACTGGGCTAAAGGGGCGGGGCATAATCATCTGGCACAGAAATTCTTTGCCAAGTTCTGTAGTGCAGTGAGCATCCTGGCCACGCCCCCACAACAGCTTTCACAGATGAGTTGGAAATCTTTGTGTGCCGAGCATCCGTCCCTGAAGCCTGTCCAGCTACACAGAATCCTCACACAGTACCAGCTCATGGCTGAGCTCGGCCCTTTACCAATCTGGCAACCCAGCAGTGAAGATGAGGCCTATATCTACAGAACAGTTGATCTACTGGAGAGTTTTGAGAACCACCCTCCTATTGTGCTGCCGAGTGCTGGATTTAAGGTGGACCTGGAGAGTGATTGTGTGGAGGACAGTATATACCGCCAGCTGCTTTACGTTCGTCACTTCCTGTGGGGTCTTCGCACCAAGACCCATCCTTCTAATGGCTGCTCAGACCGGCAGGAAGCTCAG

Function

symbol description
radil Predicted to enable GTPase binding activity. Acts upstream of or within neural crest cell migration. Predicted to be active in microtubule. Orthologous to human RADIL (Rap associating with DIL domain).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_04370401_04385955.mRNA True 4735 mRNA 0.47 11 4370401 4388020

Neighbor

gene id symbol gene type direction distance location
CI01000299_04242809_04251680 ARGLU1 coding downstream 118536 4242197 ~ 4251865 (-)
CI01000299_04227918_04239792 EFNB2B coding downstream 130609 4227520 ~ 4239792 (-)
CI01000299_04186183_04196219 MX1, MXB, MXA coding downstream 172517 4184967 ~ 4197884 (-)
CI01000299_04171373_04175441 NA coding downstream 194960 4171149 ~ 4175441 (-)
CI01000299_04158468_04164223 MX2, MX1, MXB, MX, MXA coding downstream 205686 4158001 ~ 4164715 (-)
CI01000299_04398464_04403711 NA coding upstream 8454 4393404 ~ 4403711 (-)
CI01000299_04456420_04468754 NA coding upstream 68209 4456229 ~ 4469450 (-)
CI01000299_04587880_04594059 ATP1A1A.4, ATP1A1A.5, ATP1A1A.3, ATP1A1 coding upstream 199774 4587794 ~ 4594120 (-)
CI01000299_04603421_04609353 ATP1A1A.4, ATP1A1A.2, ATP1A1A.3, ATP1A1 coding upstream 215371 4603391 ~ 4609353 (-)
CI01000299_04645836_04651938 ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1 coding upstream 257619 4645639 ~ 4651938 (-)
G407397 NA non-coding downstream 8163 4362007 ~ 4362238 (-)
G407387 NA non-coding downstream 20637 4349523 ~ 4349764 (-)
G407352 NA non-coding downstream 89024 4281164 ~ 4281377 (-)
G407348 NA non-coding downstream 98229 4271912 ~ 4272172 (-)
G407344 NA non-coding downstream 102959 4267219 ~ 4267442 (-)
G407359 NA non-coding upstream 22483 4410503 ~ 4413402 (-)
G407406 NA non-coding upstream 67426 4455446 ~ 4455680 (-)
G407408 NA non-coding upstream 78798 4466818 ~ 4467020 (-)
G405053 NA other downstream 2352351 2017687 ~ 2018050 (-)
G404976 NA other downstream 2489413 1855639 ~ 1880988 (-)
G404784 NA other downstream 2710401 1659655 ~ 1660000 (-)
G404372 NA other downstream 3294510 1070607 ~ 1075891 (-)
G407413 NA other upstream 87974 4475994 ~ 4550721 (-)
CI01000299_04913779_04927715 NA other upstream 537948 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 1053317 5427661 ~ 5443433 (-)
G407805 NA other upstream 1439816 5835889 ~ 5835989 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location