G407420


Basic Information

Item Value
gene id G407420
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4571131 ~ 4586048 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU468120
TGTTATTTAATAGCTGGTTGTTGCAGCTGACCCATTATCAGGCATTTTCCCACTCAAAATCCACTTACAATGTTTGAATATTATATAATATATTAAGATGACCAGGCTGAATGGTAATTCACACAAGCAAAAAATTATTTTAAAATAATGGCAAAGGTTCATGGCTAAATACATTGGAAGAATACAGTAAAATAAATTAACTCTATTCATAGAAGATGGTCAAAGCTCAAAACTGCAGAATTCAATGGACACCGAGCAGAATCAGTTTCCAGGAGTTCATTGTTGCATGGTGACCAGAGAACTTCCTTAATTCTTTTTTTTTATCTTTTAAGCAACAGTTGTTGGGTTAGTGTTTGTCAGCAGTTCCTTTTTTGAAGAAACACTCAGCAAAATAGATTTGATGCCATTCACGGATGCAATTTTTATATATTCAAATACAGTGCATCTCAAAACAAAATAAATGTATGCATCTTCCAAACCACAAAGAGGAAGTCTACAACCCCCACACCCTCTACTGTCTGTTAAACTGAGCTCCTCAGGAGCACGTTTAGATCCTGCCTTTTAGATTTCCCCAACTAACATTCAAAATGCAATAGACGCATGATATGAAAGCAGAAACTTTGTATTATTAACAAAAGTGAAAAAGCAGAATATATTACACTTTGGAATATTGTTAATAAAATAACAGATACAAAAAGTTGTGTACTTAAGCAGTGATCTATTAACTATAACTATGATATCATGAGTGAGCTATTCGTGAATCAAAACCACACCCTAAGCCAAATGTCCAAGCAATGTGGGAGTTCCCCACTTGGCTCAAAAAAGCAGAGGCCTTGAATGGGAACATGAACATCATCATTCTAGAGTCATGCTTTTGAATCTTCTTAAAATTCCAAAATGAACTAGACTACAACAACTTGACCTAAAATGACATTTTCCTGTTTTCCTTTAAATTATAATAGAATTAAAAAGCATACATATGGCTTTGTTGAAAAAACAAATGAATGTGTTAATACACTTTCCATCTGAATAACATTCAGGGCTCAATAGTAAGGATCAGAAAGAATGCGTTCAAAATAATACAGCAATCAGCAAGGTTTTGCATTGTATACCATCATTTTTAAGCAAAAGTTTTGATTTGATTGTTTTATTTCTCAGCATCAGAGCCGTTTCCCATGCCAATTTTTTAGCACATTTATATTTAATTATGGCATTGTCTATTTACACTGAGTGCAAACACAAAACCTATTTTACTAACTCCACCCACCACTACTCAATTTACCAATAGTACAAACAGCATATTACAACTACTTCACTTTATGTGCTTACCATCACTGTCACTAAGTGCTATTTGTTGCTACTTGGTACAAACAGTATATACACCTATTTACACTCAGTGTAAATAGAATCTACCCTTTATTTTACACATACACCCTTGTCTACACTGGACACAAGTCACATCAAAAGCAAAAGCATTTACATCCACACTGGATGTAAATGAATTTGGACCAGGGCCATCACAAGCACCAGTTTGAGTTAGAGTAAGCGGTCCCTCCTTGTCATTCGGTCCGTTCTCAATCGCCTTCCCGGTAGCAATCGCCGCAGGGCCTCCTAAAGCTTGGGGTCTGAGTTGCACTACCCTAAAAGCCTCAACATACTTCAAGTGAAACTGAAGAATGAACTAGCGTGACGTTATTTCGAACAAAATTAAGCCAAAGCGAAGTTCGTTTCTAGAGTTCGACTCAGCTTGCCAAAACGGACTTTCTGGAAACGTTCGCTCTGACTAGTAAATGCCTTCGAACTACCATTGGTCTGTGGCAATGATGTAATAGGTATGTGTGGCTCTGAGGCTCCACCTTCTTTGACATGGAAATCTTCTTCATCGAGGTCAGACGTCCGTGAGTAAAAACATGAACACGGTGGAGATTCGCTTTATAGTAGAAATTGAACTTGTAATTCTACTTGAAACAGCAGACACTGGTTTTCATGTTTAATACTGTAAAGCTGTTTATTGTTTAAAGTGCTGAATTGCAGAGCTGGTGCAAACATCTCCACATCGCTATAATCAGATGCTTTCTTAACGGTTTTCACATTTTTGTTTTGTGTTCGTCTTTCAGAGGAAAGTGCACAGCACATATTTACATATTCATCTCAACGTTGCTCACATTAGTGTGGACGGCGTCAGGATGTTCGCAAAACAGTTTACCGTTGCTCACGTATTTCGAACTTCTTTTTACTCCTAAGCGAAGAATGAAAGAGAACTTCTTAGTGAGTATATCAGGGCCTAAAGGACGACCCTGATCTGAATCATGCGCCCAAATCTGTGATGACAGCCTCAAGCCACTGCAAAGCCTTGCTTCAATGGACATGCCCAATGTAGACGAGGTGTAAGTGTAAATAGGCTCTGCGTTTAATTATGTTACATCCTAAAAAAAAAAAACTACATAAATAAAGGCATATTTACATGTTAGTTACAAACACTTCCATGCAAGTTGTGAGAATCAATATAATTTAGATTTAAAAAATTTAATAATCACCTATGTTGATCTTTGGCTATGTTTGACTACATCAGGTTTTTTTGTTTTATTTATTTATTTATTTTTTCCACAACCAATTCAAATTTGATTAATTATCTGATATATATAGTATGGTGTTATGGGGAAATCATCTCCCCACCGCCGCAATCCTTTTGACTGCTGCTCTCAAATCAGGCAGCGATAACTCGTCACCACTGCATTTAAATCCACAGTTTTCCTTATTGTCCAGTGGAAACTTGTGTCCTTGTAGGTCCAAGAAGGAAGTGGGTAAGGGATAGCACAAGAACTACTACAAAGGGGTGTAAAGGGACAAATTTGCACATATCACTAAGTTCTCATCATACTGCCAGCTTGCTTCTGGAAGTCACTTCTATGTCAAAGATTTGTCAAAATGCTACAGCTGTATCCTCACTAAACCAACAAATGCAGATAACACAGAAATGCTGAAAATGACACAAACAACACACAGATCCAACTGATTTGCAAATAACAGTGCAGACAATCCAGTCAAAAGCTCAGATTTGGAAAATAAAAATCCCTGCAGTGTGAATACATTGTAGCAATTAAACTGAGGATTGATTTATGAAAACATGAAAAGTTCAAAACTTGTAATTTTTAACAAACTAATGTCAATCATACAAAGTTTACTACTCATTTTTAAAAAGCAAATATCATCCTTGTGAAAGAAAATTTGCAAGCCGATAAGATGAAAAATCCACATTCTGTCGTTTTGTTATGGTGTCTTCACCAAACTCTGCACTTTCACAGAAGCAGAGAATTTCTATCATGGCGCCTATGCTTCCTCAGTGTTTGCCCCGTCTGAATTCTGAGGGGGACTACCTTGCTTGCTTTTATCTTTTTCCTGGTCGGTGCCGTTACTGTTTGTCTGTGCTTGAGAATATTGACCTTTTTTACATGGGCAGTGGTCATCAACAAACTTTTGAAAGCCAGCGTTGAGTTTATACAGGACAAAGAGGCTGCCAATGATGCCTAAGATGACTAGAAGGACAAGAGGCACCTTCCACGAAAGTCCGCTGTCTGGTTCATCTTTAAACAGATCTCTCTCATAGACCCGATCACTGGTTTTTTTACTTGCGCCGTTATCGAGTGTACAGGTGTAGAAGTTTTCTGGAGTTCCATTTTTATTTACTGTGATGGACTCTCCTTTTGGAGTGATTGATGAACCCTTCAGTGTTTGTCCAGTAGAATTCTTCCAGATGATTGGTTCACTGTACTCACATCTCAAATACACAACATCAGGGTTATCAATCTTCTCTATTTTTATCACAGGTTGAGGGACAGGCTCCATAACAGTCAAGGTGAATCTCTGTTCCTGCTCTTTACTGTTGATGTCAATGGTATAAACTCCACTATGGCTGTAATTTAAATTAGTTATAGTGATTTGTCCAGTGTTCTTATCAACAGTTGTGATGCCTTTGAATCTCGGATTCGGGATTAGAATTTCTCCTTCATCCCATTCAATCGCCTTCACAACAGTTCCTCCAGTGGTTCTGTGTTTCCAGATAATGCTGGTGAGAGGAGAAGGAAGAGGTTTGTCTGGACGAAAAGAAACTTGATCACCCACTGCTTTCTTCACATCTTCATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU468120 True 4144 lncRNA 0.38 8 4571131 4586048

Neighbor

gene id symbol gene type direction distance location
CI01000299_04456420_04468754 NA coding downstream 101681 4456229 ~ 4469450 (-)
CI01000299_04398464_04403711 NA coding downstream 167420 4393404 ~ 4403711 (-)
CI01000299_04370401_04385955 RADIL coding downstream 183111 4370401 ~ 4388020 (-)
CI01000299_04242809_04251680 ARGLU1 coding downstream 319266 4242197 ~ 4251865 (-)
CI01000299_04227918_04239792 EFNB2B coding downstream 331339 4227520 ~ 4239792 (-)
CI01000299_04587880_04594059 ATP1A1A.4, ATP1A1A.5, ATP1A1A.3, ATP1A1 coding upstream 1746 4587794 ~ 4594120 (-)
CI01000299_04603421_04609353 ATP1A1A.4, ATP1A1A.2, ATP1A1A.3, ATP1A1 coding upstream 17343 4603391 ~ 4609353 (-)
CI01000299_04645836_04651938 ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1 coding upstream 59591 4645639 ~ 4651938 (-)
CI01000299_04658984_04668843 ATP1A1A.4, ATP1A1 coding upstream 72847 4658895 ~ 4669022 (-)
CI01000299_04708767_04714088 RCAN1B coding upstream 122455 4708503 ~ 4714088 (-)
G407422 NA non-coding downstream 7467 4504710 ~ 4563664 (-)
G407414 NA non-coding downstream 17054 4478989 ~ 4554077 (-)
G407434 NA non-coding downstream 23325 4523411 ~ 4547806 (-)
G407429 NA non-coding downstream 56784 4509122 ~ 4514347 (-)
G407416 NA non-coding downstream 89467 4480869 ~ 4481664 (-)
G407467 NA non-coding upstream 50562 4636610 ~ 4637425 (-)
G407476 NA non-coding upstream 91062 4677110 ~ 4677446 (-)
G407477 NA non-coding upstream 91970 4678018 ~ 4678228 (-)
G407475 NA non-coding upstream 118076 4704124 ~ 4704801 (-)
G407526 NA non-coding upstream 235993 4822041 ~ 4823551 (-)
G407413 NA other downstream 20410 4475994 ~ 4550721 (-)
G405053 NA other downstream 2553081 2017687 ~ 2018050 (-)
G404976 NA other downstream 2690143 1855639 ~ 1880988 (-)
G404784 NA other downstream 2911131 1659655 ~ 1660000 (-)
CI01000299_04913779_04927715 NA other upstream 339920 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 855289 5427661 ~ 5443433 (-)
G407805 NA other upstream 1241788 5835889 ~ 5835989 (-)
CI01000299_06526127_06532048 CEP97 other upstream 1945953 6526127 ~ 6532048 (-)

Expression


Co-expression Network