G413902


Basic Information

Item Value
gene id G413902
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 9393001 ~ 9393862 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU475386
GTTTGCGGTTTAATAATCATTTGAAATGTAGCAAACTGGCAGCTCCAGTAGTAATACATATTTATGTTAAACTCTGCCATTAAAACTAGCATGTACAAACCTTAATTAAACGATTTAATGATCAATTAAAAAGGAATTTATACCTGCATGATAATGCTGGACCAGCACGGTTTGGAAAATGAATGGATGATTGATTCAGCTGCGGGCGCCATCTCCTGGCGAGACGCGGGAATTCATTCAGCACGCGACTCTCACAGTGCATTATGGGTATTCTCTAGCCGTTGAGCGTGCATCGGTTGTACACTCGTTATTGCAGTGCATTGTGGGTTTGAATGAGTGCACTCAACATCGTCCACCACTACAAATGGCTGTCCCTTCAAATAGTGCCCTATTTAAGGGTATAGGGGGCGATTTCGGACACAGCCCGTGTGTTTAATGCTGATGTGGCCCTAATGTGGGGAGGGATGATGTCCAGTTGGGGTCAGTCAGGTTGACCTGCAATGAAATGAAAAGGTTTTTAGCTACATAACATAACATAACATAACATAGGACCACAGCTGTAAAAAGTAGACAGAAAATTATAATCAGTAACTTATATAGATACGGAGCAAAAATGTCGTACCTAAGTATATAAAATAAAAATATATAAAAGGAAAAAGCCTGAGCAAAATTAAGAATTAAAAAAAAAATATATAGACATATTTAAGTAAAGGGATTCAGTTTAAATTGATTGTTGTTTCATAGAACATACAATCCAAAACAATGCGTTGATATAACGTTTGCTACTTTAGAAAACAGAAATCTCTAACTTACCTTTGTGAAAACGTAGAGAGCAAGCATACAAGAATGGAGATATCTTGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU475386 True 862 lncRNA 0.37 1 9393001 9393862

Neighbor

gene id symbol gene type direction distance location
CI01000300_09389521_09391739 NA coding upstream 648 9389521 ~ 9392353 (+)
CI01000300_09322462_09376575 SLIT2 coding upstream 15374 9322216 ~ 9377627 (+)
CI01000300_09282621_09306536 NA coding upstream 86235 9281908 ~ 9306766 (+)
CI01000300_09136541_09152739 NCAPG coding upstream 239841 9136541 ~ 9153160 (+)
CI01000300_09080472_09093223 NA coding upstream 299683 9079792 ~ 9093318 (+)
CI01000300_09486849_09487928 MAB21L2.S, MB211, MAB21L1, MAB21L2, MAB21L1.L, MAB21L2.L coding downstream 91919 9485781 ~ 9488024 (+)
CI01000300_09541949_09542458 NA coding downstream 147628 9541490 ~ 9542749 (+)
CI01000300_09658054_09661559 RS3A, RPS3A.S, RPS3A, RPS3A1, RPS3A.L coding downstream 264192 9658054 ~ 9661711 (+)
CI01000300_09725667_09740001 FAM160A1, FAM160A1A coding downstream 330408 9724270 ~ 9742037 (+)
CI01000300_09765979_09766870 DCTPP1 coding downstream 372117 9765979 ~ 9767154 (+)
G413901 NA non-coding upstream 380 9392411 ~ 9392621 (+)
G413899 NA non-coding upstream 1488 9391202 ~ 9391513 (+)
G413898 NA non-coding upstream 3544 9389245 ~ 9389457 (+)
G413897 NA non-coding upstream 4421 9388128 ~ 9388580 (+)
G413903 NA non-coding downstream 205 9394067 ~ 9394295 (+)
G413904 NA non-coding downstream 788 9394650 ~ 9394907 (+)
G414089 NA non-coding downstream 297813 9691675 ~ 9692431 (+)
G414114 NA non-coding downstream 378146 9772008 ~ 9772348 (+)
G414073 NA non-coding downstream 379300 9773162 ~ 9773839 (+)
G413459 NA other upstream 444398 8857687 ~ 8948603 (+)
G411777 NA other upstream 2923296 6469245 ~ 6469705 (+)
CI01000300_05891147_05892754 HELT other upstream 3500576 5891021 ~ 5892824 (+)
G410388 NA other upstream 5196446 4195646 ~ 4196555 (+)
G410382 NA other upstream 5268585 4123698 ~ 4124416 (+)
G414249 NA other downstream 976049 10369911 ~ 10373898 (+)
CI01000300_10604458_10604787 NA other downstream 1206074 10604458 ~ 10605033 (+)
CI01000300_10661680_10669987 MXD4.L, MXD4 other downstream 1252329 10661680 ~ 10674265 (+)
CI01000300_11704476_11708232 NA other downstream 2309622 11704476 ~ 11708351 (+)

Expression


Co-expression Network