Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU475386 |
| length | 862 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 1 |
| gene id | G413902 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000300 |
| NCBI id | null |
| chromosome length | 11740502 |
| location | 9393001 ~ 9393862 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU475385 | lncRNA | upstream | 380 | 9392411 ~ 9392621 (+) | True | G413901 |
| TU475384 | lncRNA | upstream | 871 | 9391923 ~ 9392130 (+) | True | CI01000300_09389521_09391739 |
| TU475383 | lncRNA | upstream | 1488 | 9391202 ~ 9391513 (+) | True | G413899 |
| TU475382 | lncRNA | upstream | 3544 | 9389245 ~ 9389457 (+) | True | G413898 |
| TU475381 | lncRNA | upstream | 4421 | 9388128 ~ 9388580 (+) | True | G413897 |
| TU475387 | lncRNA | downstream | 205 | 9394067 ~ 9394295 (+) | True | G413903 |
| TU475388 | lncRNA | downstream | 788 | 9394650 ~ 9394907 (+) | True | G413904 |
| TU475585 | lncRNA | downstream | 297813 | 9691675 ~ 9692431 (+) | True | G414089 |
| TU475610 | lncRNA | downstream | 378146 | 9772008 ~ 9772348 (+) | True | G414114 |
| TU475564 | lncRNA | downstream | 379300 | 9773162 ~ 9773839 (+) | True | G414073 |
| CI01000300_09389521_09391739.mRNA | mRNA | upstream | 648 | 9389521 ~ 9392353 (+) | False | CI01000300_09389521_09391739 |
| CI01000300_09322462_09376575.mRNA | mRNA | upstream | 15374 | 9322216 ~ 9377627 (+) | True | CI01000300_09322462_09376575 |
| CI01000300_09282621_09306536.mRNA | mRNA | upstream | 86235 | 9281908 ~ 9306766 (+) | True | CI01000300_09282621_09306536 |
| CI01000300_09136541_09152739.mRNA | mRNA | upstream | 239841 | 9136541 ~ 9153160 (+) | True | CI01000300_09136541_09152739 |
| CI01000300_09080472_09093223.mRNA | mRNA | upstream | 299683 | 9079792 ~ 9093318 (+) | True | CI01000300_09080472_09093223 |
| CI01000300_09486849_09487928.mRNA | mRNA | downstream | 91919 | 9485781 ~ 9488024 (+) | True | CI01000300_09486849_09487928 |
| CI01000300_09541949_09542458.mRNA | mRNA | downstream | 147628 | 9541490 ~ 9542749 (+) | True | CI01000300_09541949_09542458 |
| CI01000300_09658054_09661559.mRNA | mRNA | downstream | 264192 | 9658054 ~ 9661711 (+) | True | CI01000300_09658054_09661559 |
| CI01000300_09725667_09740001.mRNA | mRNA | downstream | 330408 | 9724270 ~ 9742037 (+) | True | CI01000300_09725667_09740001 |
| CI01000300_09765979_09766870.mRNA | mRNA | downstream | 372117 | 9765979 ~ 9767154 (+) | True | CI01000300_09765979_09766870 |
| TU474898 | other | upstream | 444398 | 8944483 ~ 8948603 (+) | True | G413459 |
| TU473010 | other | upstream | 2923296 | 6469245 ~ 6469705 (+) | False | G411777 |
| TU472695 | other | upstream | 3500576 | 5891067 ~ 5892425 (+) | True | CI01000300_05891147_05892754 |
| TU471478 | other | upstream | 5196446 | 4195646 ~ 4196555 (+) | True | G410388 |
| TU471472 | other | upstream | 5268585 | 4123698 ~ 4124416 (+) | True | G410382 |
| TU475774 | other | downstream | 976049 | 10369911 ~ 10373837 (+) | False | G414249 |
| TU475776 | other | downstream | 976049 | 10369911 ~ 10373898 (+) | True | G414249 |
| TU476000 | other | downstream | 1206074 | 10599936 ~ 10604363 (+) | True | G414454 |
| TU475996 | other | downstream | 1252329 | 10646191 ~ 10663487 (+) | False | G414452 |
| TU476886 | other | downstream | 2309622 | 11703484 ~ 11703623 (+) | True | G415198 |
