RNA id: TU475385


Basic Information

Item Value
RNA id TU475385
length 211
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G413901
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 9392411 ~ 9392621 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGCTATATATTATCAAAAAACTATATAAACTAACTTCACAAGTTTCACTTGCACCGATAGAGCAAGATCATTTCTTTTATTTTTCCTCTTCCATGGACAAGTATTTTCTTTAGCGTAAATGCGTTTAAATTCTTCATTTTCTTCAATCTCTTAACCTTCAGCAAAAGAGTTTTGAATCACGCTGGCTCTCTCGCGAGAAGTGAATCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475384 lncRNA upstream 281 9391923 ~ 9392130 (+) True CI01000300_09389521_09391739
TU475383 lncRNA upstream 898 9391202 ~ 9391513 (+) True G413899
TU475382 lncRNA upstream 2954 9389245 ~ 9389457 (+) True G413898
TU475381 lncRNA upstream 3831 9388128 ~ 9388580 (+) True G413897
TU475380 lncRNA upstream 6135 9385893 ~ 9386276 (+) True G413896
TU475386 lncRNA downstream 380 9393001 ~ 9393862 (+) True G413902
TU475387 lncRNA downstream 1446 9394067 ~ 9394295 (+) True G413903
TU475388 lncRNA downstream 2029 9394650 ~ 9394907 (+) True G413904
TU475585 lncRNA downstream 299054 9691675 ~ 9692431 (+) True G414089
TU475610 lncRNA downstream 379387 9772008 ~ 9772348 (+) True G414114
CI01000300_09389521_09391739.mRNA mRNA upstream 58 9389521 ~ 9392353 (+) False CI01000300_09389521_09391739
CI01000300_09322462_09376575.mRNA mRNA upstream 14784 9322216 ~ 9377627 (+) True CI01000300_09322462_09376575
CI01000300_09282621_09306536.mRNA mRNA upstream 85645 9281908 ~ 9306766 (+) True CI01000300_09282621_09306536
CI01000300_09136541_09152739.mRNA mRNA upstream 239251 9136541 ~ 9153160 (+) True CI01000300_09136541_09152739
CI01000300_09080472_09093223.mRNA mRNA upstream 299093 9079792 ~ 9093318 (+) True CI01000300_09080472_09093223
CI01000300_09486849_09487928.mRNA mRNA downstream 93160 9485781 ~ 9488024 (+) True CI01000300_09486849_09487928
CI01000300_09541949_09542458.mRNA mRNA downstream 148869 9541490 ~ 9542749 (+) True CI01000300_09541949_09542458
CI01000300_09658054_09661559.mRNA mRNA downstream 265433 9658054 ~ 9661711 (+) True CI01000300_09658054_09661559
CI01000300_09725667_09740001.mRNA mRNA downstream 331649 9724270 ~ 9742037 (+) True CI01000300_09725667_09740001
CI01000300_09765979_09766870.mRNA mRNA downstream 373358 9765979 ~ 9767154 (+) True CI01000300_09765979_09766870
TU474898 other upstream 443808 8944483 ~ 8948603 (+) True G413459
TU473010 other upstream 2922706 6469245 ~ 6469705 (+) False G411777
TU472695 other upstream 3499986 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754
TU471478 other upstream 5195856 4195646 ~ 4196555 (+) True G410388
TU471472 other upstream 5267995 4123698 ~ 4124416 (+) True G410382
TU475774 other downstream 977290 10369911 ~ 10373837 (+) False G414249
TU475776 other downstream 977290 10369911 ~ 10373898 (+) True G414249
TU476000 other downstream 1207315 10599936 ~ 10604363 (+) True G414454
TU475996 other downstream 1253570 10646191 ~ 10663487 (+) False G414452
TU476886 other downstream 2310863 11703484 ~ 11703623 (+) True G415198

Expression Profile