XLOC_012563


Basic Information

Item Value
gene id XLOC_012563
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 5837098 ~ 5839834 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027038
attaaattatatattaattatatttacaaatttagccttttttttcctcagagtgaagtttatttataaactaatttcgagaggatcacttgcttatgattgatcacagccggacccgcattattcaatttatgattcaccaatcagacgattcctaagccactataaataccctgagttATATAACAGCCGTCTTCGTTTTAAAGAATTCCcttttccacccctactccttctcctttcctagatgggtggcactgtggcccagaggttagcactgttgcctcacagcaagaatgccactTGTTATAGTCCTTACctagccagccgacgtttctgtgcggagtttacacattctccctgtgctcacgtggggttccccggtttcttccaactgtccaaaaacatgcaacttaagttaattgactaatcgaaatcggcaccatagacatgctcctagtaaatagttatctctATAAGAGCAATCACTGTATGTCCATTAGCtcctacagcaggggagttctcaagatctacctgagctcaaactcccctctcgcattgcaaacgggagggagccccaggctcgaggatcttatgagctcagggctctctcccaggacagcatgccaaacaagctttataatcaatcatcagctaagtgtgaactcttgaaattgggGTGAGACATAATCTTGCAATGAATCATATTCGAATTTTGGggaataaagtcagaatttcaaTTATATTTATGTAAGTCAAGATATTTTTGTCTCAAGTCTGGTTTGCATCTTTCAATTTTGATCTCTGGTAAGAGTCATAACTGaaaaataataacactaaaagagaaaaaaaagtataaattttGGGATTTATATGTCCAATTGTAAGctacaaatgacaaaaatatcatttaaaaagtaaGAATTACAAGAAACTCAGACTtgagtttatatttcacaatatttagtttaaaaacgtgTAAGACTGCATTTACAGGAATACTCAAGTCTCAAGATATAAATTTAGTGTGGGGAactctgtgttttttttatcttgcCATTTCAAGTTTTAAACTTGCAAGTGTGAAAACAAAATCAGATCTGGAGTACAGAAATTGGTAAATGACATATAAACTTGCAAATAAATCCGCAGTACTAAAGGAAAAAAGTTAGAATATCGGAAATTAAATTGTGACTACTAATTCAGATTAAATGATTGTCCTGCATGTCATCAACCGGCTTTGTCAGACTTGCGCTTCTGTACATTTAGAATAGTTGTTTTTAccattttgtttataaaaaattgaattaaaactATCATAAAAAATAAGGGCAGTACGTGAGAATTATATCACAGCACTAAAAAAATCCTCTTTAGATAGTTGTAGCTAGTTTTAAGAGGCTTTGACAACCACTCCAGTTTTACCAACCAGGATAATGTTTTGCATACGTTTACAATGTTCATTTGAATATGCGAAGATGCTTTATTTCTGGTATCACagccaattaaaaaaaagtccAGGGTACAATATTAGACACaatatttcaaaaaaataaaataaaaacgtctGAGGtcagttttacttaataaaatcAGTGTTCCTGTATCAGTTACACGCAGTAAACATCGGTGAATTCAGTGAACTGATGAGCTTTgaggccaatcacagtcatttctgttgagcatgtgaacacaaggCCAAATCAGCCCAAGAATAtagttttttacaatattttaacacTGATATGGAAAGATTAAAGTCATTCTGAACCAGATTAATGATTTAAAAGTGTGTTACTCTGCCATTTAATATAAGTGTAAATCCAGCATTTTGTTTATGTGATGATGAGTAATGAATTTGTGtgccaatttttttttagttgtgcATCGTTTATGCAATGAATTTTTACACATTCCCTGGTCATCATCATcctattattattgattattgttGAGATTATCATACAAAACAATGCAGACGGTTCATGCGGCGTAACTCGGATTGAACCAGAGTGGCTTGgcgtaatttatttttattctaaagaGACGTTTCTCGAACACTATGAGCTGTAAAGGGAATTTGTATATGCGCAAAATCCCTCAAGATCACGTTTTGAATCTGAAATGAGACTATTTGCCTTTTATCAGCACATAAATAAGAATGTATCTCATGCTTTTTTTTATACCTTGTTTTGATCGGGTAGAAGAGGGACATCGTTTGCATTAGAATAATTAGGGTTTTTGCATTCTGTGCTATTATTACTACTGCAACAGTATTCGCCTGAcctcaactcttttttttttttttttcagacatgtTTAAAACTCGTAATTCTAGATATTACTTGACTGTAAAGGCTGGGGGACGTCTGCTCTTAAATGACCTTCGTTAACCTCAAATCTATAGCATTAGGGGTTCAACTATTGCATATGCTATCAGaccttttgaaaaaaatgtattggaGGTGATTAGTCGGAAATCATCCCAAAAAAGAAATAGAAATTGTTAACTTTGACTCCAACGTTCAATCTTCCCCCACTTTAGATCTTCAGTGCTGCAGATTTGTGCGAGCGAAAACGGGTTGAAGCGGATTTGTGCAGTGTGAACTTGTTGGAAACGGGGCACAGAAGCAAAGGATATGGAATTGTGTCTGTGATAAATGGTGTAAACAAATATCATTCTGATACTTTCAGGTGTTATGATGTTCTTATGTAAAGTTCTTTTACATAATAAAGTCAT

Function

GO:

id name namespace
GO:0072698 protein localization to microtubule cytoskeleton biological_process
GO:0044380 protein localization to cytoskeleton biological_process

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027038 True 2737 lncRNA 0.35 1 5837098 5839834

Neighbor

gene id symbol gene type direction distance location
XLOC_012562 zdhhc7 coding upstream 6684 5813996 ~ 5830414 (+)
XLOC_012561 NA coding upstream 159732 5672914 ~ 5677366 (+)
XLOC_012560 NA coding upstream 169482 5658327 ~ 5667616 (+)
XLOC_012559 ulk3 coding upstream 195368 5618368 ~ 5641730 (+)
XLOC_012558 NA coding upstream 235422 5601144 ~ 5601676 (+)
XLOC_012564 cog8 coding downstream 11003 5850837 ~ 5859484 (+)
XLOC_012565 wdr59 coding downstream 35434 5875268 ~ 5912156 (+)
XLOC_012566 glg1b coding downstream 77791 5917625 ~ 5969245 (+)
XLOC_012567 si:ch73-386h18.1 coding downstream 199307 6039141 ~ 6083792 (+)
XLOC_012568 si:ch1073-390k14.1 coding downstream 286672 6126506 ~ 6143192 (+)
XLOC_012556 CU595864.1 non-coding upstream 297524 5528981 ~ 5539574 (+)
XLOC_012554 NA non-coding upstream 331520 5502958 ~ 5505578 (+)
XLOC_012570 BX321877.1 non-coding downstream 460774 6300608 ~ 6305665 (+)
XLOC_012573 CU928088.1 non-coding downstream 684942 6524776 ~ 6524890 (+)
XLOC_012578 NA non-coding downstream 910220 6750054 ~ 6757446 (+)
XLOC_012579 NA non-coding downstream 940656 6780490 ~ 6785702 (+)
XLOC_012581 NA non-coding downstream 1094190 6934024 ~ 6936237 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G165948 NA non-coding CI01000032 null 2789852 ~ 2790079 (+)
tiger barb (Puntius tetrazona) G127663 NA non-coding NC_056716.1 CM032085.1 19985741 ~ 19991636 (+)