XLOC_012571 (ptprq)


Basic Information

Item Value
gene id XLOC_012571
gene name ptprq
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 6319447 ~ 6406609 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025161
GTGTCCAGCGTCACCCCAGGAACGTCTTACACCGTGACGGTCAATGCAGTGGCTTCATCAGGCTTCAGTTCTCCTGTCAGCCGAATACTGGTCACCACTATTGAGTCCTCGGCCCCCTCTAAACCTGAAGGTGAACGGGTCGGTTCCACCGGCATCCTGCTGTCCTGGCGGATGCCGATGCCTCTCGACCCCTCCATTCACTCATTCGTCATCAGATATAAGGAGATGTGTCCATATCCAGACCCCAGCTTCACGGAGATCACCAAGAGCCTGGACATCCCAGAAACCCTGCTGAACACACTCACCCCTGGAGCCACATACAACATCAAGGTTGCGGCAGTGAATAAAGCAGGAGTTGGACCATTTAGCCAGTCTCTGTACTACAAAACAGCAGAGGCCCCTCCTGGTCTGGTGTCGAATCTCACAGCGTTTGCTGAGGATCACACATCAGTCATTGTGACCTGGTTTCTCCCTGTACGTATTAATGGCCTCATCACTAAGTTTGCAGTGAAAGTCAAGCATGCTCGAACAGGCCAGATCGTCCGCACGAAGGAACTGAACGCTGAGGATATCATGAACGGAGCCTTGCCTCACTGCAACGATGCTGCAGATATTTTATCCCGTGGGACTCCGAGCCCATCCCAGACTTCCCAGTTGACATCTGCTGTGTTGCCCCCGATTACACTGTCAGCAGTTCCACCCGCCTCCATCTGGAGTGTACCAATCAGTGTGAAGATTGATGAGCTCCGCCCCTACACTCCTTATGTGTTTGAGGTCTCCGCCTTCACCAGTGACGGGGAGGGCCAGATCGCCAGCACTATGGTCCGCATGCCAGAGGCTGCCCCTGAAGACCCACCGCAAAATGTAGTTTTAAGAAACATTACTTCTAAATCCGTGTCTCTAACTTGGGAGCCTCCAAAGATCATCACAGGACGCTTCAGTTATGTTATCCAGCTTCACAGCTCTGAAGGGTTGATTAGTGAGAACAGCACAATCGATCAGATGTTTATTTACACTGGACTGACTCCATACACAACATACTACATCCATGTGATGGCCAAATCAGCAGGTGCCGCAGGACCAGCAGCAGTGATCAACATTACAACACTAGCAGaagCCCCGAGCGCAGTGTCTCTTCTGAAAGCAGAGGCTGTGGACTCCACATCAGTCCGTCTGTCCTGGCGATCCCCAATCCAACCCAATGGTCTGATCACTCACTACCGCATTCTGGTGCTGTACCATGATACACTTGTACAGGACATCACCCTGAGAGGACAGAATCTCATTTCTCCACTTCGTCGCAATGCAAGGTCACTTGACTTCACCACAGAATCTGTGTTTACTCTTACCTCACATGAAACATTTTCCACTCTGGGTCGTGATTTTACCAACACTGATACAGAAGCACCATCAGCCCTTCCTCTGACCCCGAGTACCCCCCACACTCCTCCACCATGGCTCACGGTGACCCACGACAGAACCGACGCATCCGTTCAGACTCAGACTGATGCTGTAACTGAAGACCTGACGACTGAACACCCACCTGTCACTCCAGTCCTACCAGCCACTGAGGTGTCAGCAGACCTGTCATCTGATCAAATCACGCATGTGGTTCGAAGACTGAGTCCGTTCACCGAATACAAATTTAGCGTGTCAGCCAAAAACATCATTGGGGAAGGACCTTCCACCGAAGTTAcagtgaaaacaaatgaacaGGTGCCCAGCTCTGTTCAGAATGTGTCCTATCAGAACCTGTCGTCTACATCCATCCGTGTTTCATGGGAGCCGCCGCTAAACCCTAACGGCAAGATAACACACTATGCTGTGTATGCGCAAAATCTGCTTACTAACCAAGAGTTACGACAGATGACGGACACCACCACTGCTGTCCTCACAGGTCTGGACAAGTACAGCAGCTATAAGGTGCGAGTGGCGGCGTCCACTGCTGTGGGAGAAAGTCCTCTAACCAATGAAGACTACATCTACGTTGTGACACTAGAGGATGTGCCGGATTCGCCCCCACGGGGTCTGACCATAGTGAAAACCACCTCCTCCACCGCTACACTCTCCTGGTCTCCACCCGAGAAGCCCAACGGCATCATCCGCATGTATGAGATCTCCTACACCAACGGCACATACAGTAACACAGTCAACAGCACATCGGCCAGTGCAACGCTCCGATACCTgaagccacacacacactacaatgtGACTGTCCGTGCATTTACACTACTCGGacatggagagcagatttctgaAACACTACAGATGCTGTCAGGAGAGGATGtGCCTGGCAGTCCCCCTTATGATCTGTCCTATGAGAGCATCGGCTCCAGCTCAGTGAACGTATCCTGGTCTCCTCCACTCCTCGCAAACGGTGTCATCCTCTTCTATAATGTGGAATACTGGAACGCCACACAAAGCCTGAACCAAACCACACACATGCCATACATCGTCCTGTCTAACCTGCGAAAATATGCACACTACCGCATCAGCGTCCAGGCAGCCACACAGGTGGGCATGGGCAACCACACCAGCGAGATCCTCAACATCACCACACTGGAGGACGTACCCAGTTCTCCTCCAAAATTCCTAATTGCCAGGAAATTGTCAGATACTGAGGTAGAGTTGTCCtgggaggccccggaggaggccAACTCTGAGATTTTATACTACATAGTAAGAGTGTGGAATCTGAGCACTGAGTTTGTGGCCAATGTGACGGAAACATCAGTAGTTGTGAGTGTGGATGGACCGGGTCAGTATAACGCCTCTGTGAGCAGCTGGACTCGACTCGGGGATGGAGGATTGCTGATTTACATCACATTCAGTACTATAGAATCAGCCCCCTCTGACCCTCCACAGGATGTAGTATACACACTCCTTACCATCAGTACAGTGCGTCTCAGCTGGAGACCCCCAAATGAACCCAACGGCATCATTCAGTACTACACCATCTACTACACAGACAATAATACAGAGTACACAGagAGGGTTCCTGGTTCAGAGCACCAGCTGCTGTTGTCTGATCTGCAGGCGGGACAGGACTACAGTGTATGGATGAGTTCCAGCACCTCTGTTGGTGATGGGGGATTGTTCAGTCCCTCTCTAAACTTCACCACCTTAGAGGACGTGCCGAGTGGTCCCGTCCACAACCTCAGCGCCACCATCTACAGCTCCACAGCGGTGGTGATCAGCTGGGATCCTCCTCTGGAGCCCAATGGTAGAGTTTACTACCAGCTGAGCCTGCAGGAGGCGGGCATCACCCACCCGTCCATCAACCGCACAGTCAACATGACCATCACCAAAACCACCACCGACACCATCTACCTCTTCACCAAGCTCAGGAAGTATTTCCCCTACATCATAAACGTCACACCAGCCACGAGTGCAGGATCCGCTGTAAACCACACTACAATGCTACACCTGCGGACAGATGAAGATGTTCCGAGTTCTCCTCCATTGTCTGGATCAAACAAGAATCTCTCCAGCACCTCCATCCAGGTGTCGTGGTTTCCCCCAGTGGAGGCTAATGGCGAGATTATAGAGTATGCTGTGAATTTACAGGGTCCTTCCACCTCCAACAAAAACTACACCTCTGAGACACATCTGGTGCTGTCAGAACTCACTCCGTTTACACCATACAATCTCTCCATCGCTGCGGTCACTCGTGTCGGTACCGGCCCCCCGGTGGTTCTTTCACTACATACTGATGAAGCAGGCCCGATGTCTCCGCCACGCAATCTGACTATATTTAACCACACTGCAAATTCAGTGTGGCTTCAGTGGGAACCAAGTCCAGAGCCGAATGGAGTTGTACAGCTTTACGGATTCAGAATACTGGAATTGAATACAGACTCTTTCAGATACCAGAACTCATCTGATGCGTCCACACAAGCAGAACTGGGTGGCTTCAAACCTCATAATTCATATGAAATCAGTGTGTGCACATTCACTAGAGCAGGAAATGGAGATCAGTACAGCCTGCCTGTCTTATTCACCACCAATGAATCAGTGTCAGATGCTGTTGGGAATCTGAGCTGCTCTGGATTGGATTGGGATTCAGTCTACATGGAATGGGAGCTTCCGGATCACCCTAATGGAGAGATCCTGTATTACCTCATTCGCTCTGGAGATCTGGAGGATGAGGCTCACCCTGTGGTCCTCACACACACTGTGGCTCACACGCTCACTGGCCTTTCACCTCACGCTTTCTACCTCATCACTGTGGCTGCAGTAAATTCAGCCGGTGTGGGAGAAGAAGCAAACTGCAGCGCACACACTCCACCAGAGTCAGTTCCCGGTCCCTCCCATTCGCTGACCGTTACGGACGTCACCTCTGACAGTGTGTCTGTAAGCTGGCAGCGTCCCGTTCATGTGCCAGGTCTTTTGCAGGGTTACAATGTAGAGATCGAGCAATTATCCAGAAACTGTGAGCGGCAGCAGCAGCAAGTGGAGTCTTGTATGGAGGCTCAGATCTTGGAATGGGTTGAAGGAGAAACCACCAGAGCCACACTGACCTCTCTGCTCAAATACAGACAGTATCGTATCAGGGTCGTGGCCTTCACCAGAGCTGGAGCCGGAGAGCCTTCAGAGTGGATCTACACACAGACGCTCGCAGGAAACCCTGACGCTCCTCCTGGCGCTATCTCTGTGGTTCCTTCTGCCAATGGGTTGAAGATTGAGTGGGACAAACCATCAGTCATCTCGGGGCCCACATCATACATCATCGACATCACTGCTCTGGACGGTTCGGGATATAACATAACTTTAGTGCGGCATTCAGAAGAGATCAGGACAGTGATTGTCGGGAACCTGAGTGCATTTACTCTGCACTCTGTTACCATCACCGCCTTCACCGGGCCACTCTCCAACGCTCGCAGAGACGGCAAAGCATCTGAACCTGTCCTCATCAGAACCTTGGAGGATGAGCCCAAAGATCCTCCAAAAAACGTGACATTGACAGTGATTCCGGAGGAAGTGACGCGTGTTTATGTAACATTCTCCCCACCGGATGAGCCAAATGGAAACATCAGCGCATATCGTGTCGACATCTACCGCAACGGGCAGCTGGACTTCTTCATCAACAGCCTGTCTGTGATCAGCAACCCAAATAATACCATGACAGCCATAATTGATGGATTAAAAGGTGGATTTAATTACAGCATAAGgATAGCAGCTGTGAATGGAGCAGGTTTTGGACCAAGTTCGGAGGTTCATGTCACCACAGGTGTGAAAGCTCCTCCCAAACCGAAGAAGACGCCGCGGGCAGCTCTGAACAGTGCTGGTGTCATCATCTCAACCTCCAAGACCATCACCATCGAAATGCCTGAATGTTTCTTCACTGATGACCATGGACCAATTCAGAAAGTCCAGGTCATAGTTTCTGAACCCGCAGTGATGGACTACGGTAATCTATCCAACTGGAAGAGTGTTTTCCTCCACCCCACTGCTCCATACCTGACAGACGATGGCTTCCTGAACCCAGAGTGCCCTAAAAATTCTGAGCGCATGAGCTCAAGCACTAAGACGTATGTTATAGGAGAAGACGAGGGCTGCCTGTCTGAAGATGCAGAGACGCTTTGTAACGGACCTCTGAAACCCAAAACACATTATGTgtTCAAATTTCGAGCGACAAACATACGTGGCCAGTTCACAGACTCTGAGTACTCAGACAAAGTCAGAACTGCAGATGACCGCTTGCTGACCAGAGATGAGCAGATCATCCTTGGAGTCTTGCTGTCATTTTTTCTGGCGTTGTTTTTAATTCTGATTATATATGGATCTGTGAAGATCCACCGGAGGAAGAAGGAAGGAGGGACGTATTCGCCACGCCAAGCCGAGATTATTGAGACCAAATTCAAGCTGGATCAGCTCATCGCTGTGGCCGATCTGGAGCTCAAAGAGGAGAAGATTAATCGGCTGCTAAGTTACAGGAAATCCCTCAAGCCAATCAGTAAGAAATCGTTTCTTCAGCATGTGGAAGATCTTTGTGCCAACGACAACGCCAAGTTTCAGGAGGAGTTTGCTGAGTTGCCGAAGCTGCTGCAGGATCTGGCCACATCAGACGCTGACCTGCCTTGGAATCGCTCCAAAAATCGCTTCACAAACATCAAGCCCTACAACAATAGCCGAGTGAAGTTGCTGTCTGAGCCAGGAATGCCGGGTTCTGACTACATCAATGCCAGCTTCGTCTCTGGCTATCTGTGTCCTAATGAGTTTATAGCCACTCAGGGCCCTCTGCCGAGCACCGTCGCAGATTTCTGGAGGATGATTTGGGAAACTGGGACTAAAACCATCGTCATGCTTACTCAATGCTTTGAGAAGGGCCGGATCCGCTGTCATCAGTACTGGCCGGAGGACAATAAACCAGTCACTGTTTTTGCTGACATCATAATCACTAAACTCACAGAGGACGTGCGTCCTGATTGGACGGTGCGGGCACTCAAAGTGGAGCGGCATGGCAGCTACATGATTGTCCATCACTTTAACTACACCTCATGGCCAGAACACGGCGTTCCCGAATCCAGCTCCACACTTGTCCAGTTTGTCAAAGCCGTTCGCTCCAACAGAGGCCATGAAAACACTACCATCGTGGTCCACTGCAGTGCTGGTGTGGGCAGGACTGGAGTGTTTATAGCACTGGATCATCTCATCCAGCATTTGCGAGATCATGAATTTGTTGACATATACGGCCTGGTCGCAGAGCTGCGCAGTGAGAGGATGTGTATGGTGCAAAACCTGGCTCAATACATGTTTCTCCATCAGAGCACTCTGGATCTGCTGTCGGCCAAAGGAAACAGTCAGTCCATATGGTTTGTCAATTACTCCGCTCTGGAGAAGATGGACTCGCTGGATGCAATGgaggGTGACGTTGAATTGGAGTGGGAAGAGACGACCATGTAG
>TCONS_00025162
tcatttcaaaacaagattattttgctcaccacATTGACAGATTAGTTTGCTTCTTATCTGTTGTTTGTCTAAAATGACTCttggtttatttttttgatatttggactagaaacaagaaaaaaagttgTAGGTGAgaaacatttttgcagtgtatagtTGTATGTTTAAAGGCCATAAAGAAAGCTGTACTGCAGACTTAATGTGAATAATGCTGAAGTTGATGGTTTTTCATGTTTTGTGAGTATTTTCACACTCTTTCTAACACATTTGCAGGCCAATCAGTAAGAAATCGTTTCTTCAGCATGTGGAAGATCTTTGTGCCAACGACAACGCCAAGTTTCAGGAGGAGTTTGCTGAGTTGCCGAAGCTGCTGCAGGATCTGGCCACATCAGACGCTGACCTGCCTTGGAATCGCTCCAAAAATCGCTTCACAAACATCAAGCCCTACAACAATAGCCGAGTGAAGTTGCTGTCTGAGCCAGGAATGCCGGGTTCTGACTACATCAATGCCAGCTTCGTCTCT

Function

symbol description
ptprq Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 73 and autosomal recessive nonsyndromic deafness 84A. Orthologous to human PTPRQ (protein tyrosine phosphatase receptor type Q).

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:1990264 peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity biological_process
GO:0016311 dephosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-050419-183 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 73 and autosomal recessive nonsyndromic deafness 84A. Orthologous to human PTPRQ (protein tyrosine phosphatase receptor type Q).

Ensembl:

ensembl_id ENSDARG00000008849

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025161 False 6906 mRNA 0.51 43 6319447 6406609
TCONS_00025162 True 523 processed_transcript 0.40 3 6396771 6400268

Neighbor

gene id symbol gene type direction distance location
XLOC_012570 BX321877.1 coding upstream 13782 6300608 ~ 6305665 (+)
XLOC_012569 otogl coding upstream 53914 6155258 ~ 6265533 (+)
XLOC_012568 si:ch1073-390k14.1 coding upstream 176255 6126506 ~ 6143192 (+)
XLOC_012567 si:ch73-386h18.1 coding upstream 235655 6039141 ~ 6083792 (+)
XLOC_012566 glg1b coding upstream 350202 5917625 ~ 5969245 (+)
XLOC_012572 wash1 coding downstream 73354 6479963 ~ 6499252 (+)
XLOC_012573 CU928088.1 coding downstream 118167 6524776 ~ 6524890 (+)
XLOC_012574 fkbp4 coding downstream 129684 6536293 ~ 6550378 (+)
XLOC_012575 b4galnt3b coding downstream 151537 6558146 ~ 6619842 (+)
XLOC_012576 c2cd5 coding downstream 232117 6638726 ~ 6703644 (+)
XLOC_012563 NA non-coding upstream 479613 5837098 ~ 5839834 (+)
XLOC_012561 NA non-coding upstream 642081 5672914 ~ 5677366 (+)
XLOC_012560 NA non-coding upstream 651831 5658327 ~ 5667616 (+)
XLOC_012558 NA non-coding upstream 717771 5601144 ~ 5601676 (+)
XLOC_012578 NA non-coding downstream 343445 6750054 ~ 6757446 (+)
XLOC_012579 NA non-coding downstream 373881 6780490 ~ 6785702 (+)
XLOC_012581 NA non-coding downstream 527415 6934024 ~ 6936237 (+)
XLOC_012582 CU467655.1 non-coding downstream 579267 6985876 ~ 6994125 (+)

Expression


Co-expression Network