XLOC_012574 (fkbp4)


Basic Information

Item Value
gene id XLOC_012574
gene name fkbp4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 6536293 ~ 6550378 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025166
TTCTAGACTTTGCCGTCTCCTCGCTCTCGCGCAGCTCTGGAAAGTTCGCTGAGTCGATTCAGTTTCCAGCGGCGGCCCGATCGTTATATAAACGCCTCGCGGAGTCCCTGCGCGTTCCCAAAAACCACATTTATCGGCCGCTGACTGCCACAATCGCGCGATAGCTTAGCAAATCCACTCCTAATACCGAAATTAAAGCCGTTTAGCCCTGCAGACGTCGAGTCTTCAGTGATTTCTGCACGTTAGCTGTTGAAGGAAAGACCTCGGCGAGGAGACTCAGTCTGTATTTTGGTGGTATTTTGAAGGTGATACCTATATTAAAGCGACGATGACTGCAGAGGAGGTGGCGAATGAAGGTTGTAGCATCCCCATCGAGGGTGAAGACATTACCCCGAAGAAAGATGGAGGGGTTTTAAAGTTGGTCAAGAAGGAGGGTACTGGCACCGAGTTGCCTATGATTGGTGATAAAGTATTTGTGCACTATGTCGGAACACTGCTTGATGGCTCACAGTTCGACTCCAGCCGTGATCGAGGGGAAAAGTTCTCCTTTGAGCTGGGCAAAGGTCAGGTGATCAAAGCATGGGACATCGGTGTGGCTACAATGAAGATTGGCGAGATCTGCCAATTGACATGCAAACCTGAGTATGCATACGGAGCTGCTGGCAGCCCCCCAAAAATCCCTCCTAATGCTACTCTTCTGTTCCAGGTGGAATTGTTTGACTTTCGTGGGGAGGACATCACAGATGATGAAGATGGTGGAATTACCCGCAGGATCATCACTAAGGGGGAGGGTTACACAAAGCCTAATGAGGGTGCAACTGTGGAAGTCTGGTTGGAGGGCTCTCATGAGGATCGTGTTTTTGACGAGCGCGAGCTGAAGTTTGAAGTGGGAGATGGTGAGAATTTGGGTCTGCCACTGGGTGTGGAGAAAGCCCTGCAGGCTATGGAGCAGGGAGAGGAGGCACTCTTCACCATCAAACCAAAGTACGGTTTTGGAACCGCTGGCAGCGAAAAATACAACATTCCACCTAATGCTACACTGCAGTACAAAATCAAAATGAAAGCATTCGAAAAGGCCAAAGAATCCTGGGAGATGAACACGATTGAGAAACTGGAACAGAGTGTCATCGTCAAAGAGAAAGGAACTCAGTATTTTAAGGAGGGAAAATACAAGCAGGCGATTGTACAGTACAAACGCATTGTTTCCTGGTTGGAGCACGAGAGCAGTATGCAGCCAGATGATGAGGAGAAAGCTAAAGCGCTGCGATTGGCTGCTTACCTCAACCTGGCCATGTGCTACCTGAAGCTACAGGATGCAAACCCCGCCCTCGAGAACTGTGACAAGGCACTGGAGCTGGACGCCAATAACGAGAAGGCTTTATTTAGGCGAGGAGAGGCTCTGGTTGTCATGAAGGAGTTCGACATGGCGAAAGTAGACTTCCAGCGTGTCATTGAGTTATACCCAGCCAATAAAGCAGCAAAGAGCCAGATCTCGATCTGCCAGAAACACATGAGAGAGCAACACGAGAAGGACAAACGCCTCTATGCCAACATGTTCCAGAAGTTTGCAGAGAGAGACGCCAAAGAAGCCGACCAAGAGAAAGAGCAGGATAAGAAACAGAACGGTAGCGCAATGGAAATAGATGAAAACGCAGCCCAGGAACAAACCGCAGCATAATAGCGTGCGtttgtattatttactgtcttttgtgggtttgtttggttttttttttaagaggttGTTTTGTACTTTCTATGATTTCCGCCCTCTAGAAGCGACTGTGTTTATGCAAGTGAGGACGCGTACACACTTTAGTTTCTAATCTGTTGTAAAGACTTGTTttctttggtttgttttttttaaacaacagctTTCCACGTTTAATGTTTATGACTTATCACAACTGGAAGCCTTTGGATAGTGAATTTCTGCTGAAGTCTTACAAGCGTCTTAGAGAAACCACGCACTTTTCCTGTGAAGAAGAGTCTAGTCtttgctttaatagttttgtcttTAGgcctttttttttggtaatactgTTCTTAGCGGAGAAACACCATCAATATGGGGCTGAGatgtcatttttaaatgcaaGGTGAGAACATGaactttttttccccttcttcaTCTTCTTGTTGAACAAGATTCCCCATGATTTCTCCATGATTGCACTTGCGCACTGTAATGATCATGGCAGAAGAGGCTTGCTTTACACTGTGTGGCAGGATTACTGTACTGAATGAGAGACATACAGACAGTTCTGTTCACATGTCCTTGATGCTCTTCTGATGTTGACTAGAACAATAAAACAAGCTCTGAATCCTC
>TCONS_00025167
GTGATACCTATATTAAAGCGACGATGACTGCAGAGGAGGTGGCGAATGAAGGTTGTAGCATCCCCATCGAGGGTGAAGACATTACCCCGAAGAAAGATGGAGGGGTTTTAAAGTTGGTCAAGAAGGAGGGTACTGGCACCGAGTTGCCTATGATTGGTGATAAAGTATTTGTGCACTATGTCGGAACACTGCTTGATGGCTCACAGTTCGACTCCAGCCGTGATCGAGGGGAAAAGTTCTCCTTTGAGCTGGGCAAAGGTCAGGTGATCAAAGCATGGGACATCGGTGTGGCTACAATGAAGATTGGCGAGATCTGCCAATTGACATGCAAACCTGAGTATGCATACGGAGCTGCTGGCAGCCCCCCAAAAATCCCTCCTAATGCTACTCTTCTGTTCCAGGTGGAATTGTTTGACTTTCGTGGGGAGGACATCACAGATGATGAAGATGGTGGAATTACCCGCAGGATCATCACTAAGGGGGAGGGTTACACAAAGCCTAATGAGGGTGCAACTGTGGAAGTCTGGTTGGAGGGCTCTCATGAGGATCGTGTTTTTGACGAGCGCGAGCTGAAGTTTGAAGTGGGAGATGGTGAGAATTTGGGTCTGCCACTGGGTGTGGAGAAAGCCCTGCAGGCTATGGAGCAGGGAGAGGAGGCACTCTTCACCATCAAACCAAAGTACGGTTTTGGAACCGCTGGCAGCGAAAAATACAACATTCCACCTAATGCTACACTGCAGTACAAAATCAAAATGAAAGCATTCGAAAAGGCCAAAGAATCCTGGGAGATGAACACGATTGAGAAACTGGAACAGAGTGTCATCGTCAAAGAGAAAGGAACTCAGTATTTTAAGGAGGGAAAATACAAGCAGGCGATTGTACAGTACAAACGCATTGTTTCCTGGTTGGAGCACGAGAGCAGTATGCAGCCAGATGATGAGGAGAAAGCTAAAGCGCTGCGATTGGCTGCTTACCTCAACCTGGCCATGTGCTACCTGAAGCTACAGGATGCAAACCCCGCCCTCGAGAACTGTGACAAGGCACTGGAGCTGGACGCCAATAACGAGAAGGCTTTATTTAGGCGAGGAGAGGCTCTGGTTGTCATGAAGGAGTTCGACATGGCGAAAGTAGACTTCCAGCGTGTCATTGAGTTATACCCAGCCAATAAAGCAGCAAAGAGCCAGATCTCGATCTGCCAGAAACACATGAGAGAGCAACACGAGAAGGACAAACGCCTCTATGCCAACATGTTCCAGAAGTTTGCAGAGAGAGACGCCAAAaAGGAAGCCGACCAAGAGAAAGAGCAGGATAAGAAACAGAACGGTAGCGCAATGGAAATAGATGAAAACGCAGCCCAGGAACAAACCGCAGCATAATAGCGTGCGtttgtattatttactgtcttttgtgggtttgtttggttttttttttaagaggttGTTTTGTACTTTCTATGATTTCCGCCCTCTAGAAGCGACTGTGTTTATGCAAGTGAGGACGCGTACACACTTTAGTTTCTAATCTGTTGTAAAGACTTGTTttctttggtttgttttttttaaacaacagctTTCCACGTTTAATGTTTATGACTTATCACAACTGGAAGCCTTTGGATAGTGAATTTCTGCTGAAGTCTTACAAGCGTCTTAGAGAAACCACGCACTTTTCCTGTGAAGAAGAGTCTAGTCtttgctttaatagttttgtcttTAGgcctttttttttggtaatactgTTCTTAGCGGAGAAACACCATCAATATGGGGCTGAGatgtcatttttaaatgcaaGGTGAGAACATGaactttttttccccttcttcaTCTTCTTGTTGAACAAGATTCCCCATGATTTCTCCATGATTGCACTTGCGCACTGTAATGATCATGGCAGAAGAGGCTTGCTTTACACTGTGTGGCAGGATTACTGTACTGAATGAGAGACATACAGACAGTTCTGTTCACATGTCCTTGATGCTCTTCTGATGTTGACTAGAACAATAAAACAAGCTCTGAATCCTC

Function

symbol description
fkbp4 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Orthologous to human FKBP4 (FKBP prolyl isomerase 4).

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0061077 chaperone-mediated protein folding biological_process
GO:0005737 cytoplasm cellular_component
GO:0005528 FK506 binding molecular_function
GO:0031072 heat shock protein binding molecular_function
GO:0016853 isomerase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-514 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Orthologous to human FKBP4 (FKBP prolyl isomerase 4).

Ensembl:

ensembl_id ENSDARG00000008447

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025166 False 2326 mRNA 0.46 10 6536293 6550378
TCONS_00025167 True 2024 mRNA 0.45 10 6536598 6550378

Neighbor

gene id symbol gene type direction distance location
XLOC_012573 CU928088.1 coding upstream 11403 6524776 ~ 6524890 (+)
XLOC_012572 wash1 coding upstream 37041 6479963 ~ 6499252 (+)
XLOC_012571 ptprq coding upstream 129684 6319447 ~ 6406609 (+)
XLOC_012570 BX321877.1 coding upstream 230628 6300608 ~ 6305665 (+)
XLOC_012569 otogl coding upstream 270760 6155258 ~ 6265533 (+)
XLOC_012575 b4galnt3b coding downstream 7768 6558146 ~ 6619842 (+)
XLOC_012576 c2cd5 coding downstream 88348 6638726 ~ 6703644 (+)
XLOC_012577 lmf2a coding downstream 155762 6706140 ~ 6727914 (+)
XLOC_012578 NA coding downstream 199676 6750054 ~ 6757446 (+)
XLOC_012579 NA coding downstream 230112 6780490 ~ 6785702 (+)
XLOC_012563 NA non-coding upstream 696459 5837098 ~ 5839834 (+)
XLOC_012561 NA non-coding upstream 858927 5672914 ~ 5677366 (+)
XLOC_012560 NA non-coding upstream 868677 5658327 ~ 5667616 (+)
XLOC_012581 NA non-coding downstream 383646 6934024 ~ 6936237 (+)
XLOC_012582 CU467655.1 non-coding downstream 435498 6985876 ~ 6994125 (+)
XLOC_012583 CU467655.2 non-coding downstream 449816 7000194 ~ 7012242 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_11893589_11902743 FKBP4 coding CI01000013 null 11893290 ~ 11902743 (-)