RNA id: TCONS_00025161


Basic Information

Item Value
RNA id TCONS_00025161
length 6906
RNA type mRNA
GC content 0.51
exon number 43
gene id XLOC_012571
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 6319447 ~ 6406609 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTCCAGCGTCACCCCAGGAACGTCTTACACCGTGACGGTCAATGCAGTGGCTTCATCAGGCTTCAGTTCTCCTGTCAGCCGAATACTGGTCACCACTATTGAGTCCTCGGCCCCCTCTAAACCTGAAGGTGAACGGGTCGGTTCCACCGGCATCCTGCTGTCCTGGCGGATGCCGATGCCTCTCGACCCCTCCATTCACTCATTCGTCATCAGATATAAGGAGATGTGTCCATATCCAGACCCCAGCTTCACGGAGATCACCAAGAGCCTGGACATCCCAGAAACCCTGCTGAACACACTCACCCCTGGAGCCACATACAACATCAAGGTTGCGGCAGTGAATAAAGCAGGAGTTGGACCATTTAGCCAGTCTCTGTACTACAAAACAGCAGAGGCCCCTCCTGGTCTGGTGTCGAATCTCACAGCGTTTGCTGAGGATCACACATCAGTCATTGTGACCTGGTTTCTCCCTGTACGTATTAATGGCCTCATCACTAAGTTTGCAGTGAAAGTCAAGCATGCTCGAACAGGCCAGATCGTCCGCACGAAGGAACTGAACGCTGAGGATATCATGAACGGAGCCTTGCCTCACTGCAACGATGCTGCAGATATTTTATCCCGTGGGACTCCGAGCCCATCCCAGACTTCCCAGTTGACATCTGCTGTGTTGCCCCCGATTACACTGTCAGCAGTTCCACCCGCCTCCATCTGGAGTGTACCAATCAGTGTGAAGATTGATGAGCTCCGCCCCTACACTCCTTATGTGTTTGAGGTCTCCGCCTTCACCAGTGACGGGGAGGGCCAGATCGCCAGCACTATGGTCCGCATGCCAGAGGCTGCCCCTGAAGACCCACCGCAAAATGTAGTTTTAAGAAACATTACTTCTAAATCCGTGTCTCTAACTTGGGAGCCTCCAAAGATCATCACAGGACGCTTCAGTTATGTTATCCAGCTTCACAGCTCTGAAGGGTTGATTAGTGAGAACAGCACAATCGATCAGATGTTTATTTACACTGGACTGACTCCATACACAACATACTACATCCATGTGATGGCCAAATCAGCAGGTGCCGCAGGACCAGCAGCAGTGATCAACATTACAACACTAGCAGaagCCCCGAGCGCAGTGTCTCTTCTGAAAGCAGAGGCTGTGGACTCCACATCAGTCCGTCTGTCCTGGCGATCCCCAATCCAACCCAATGGTCTGATCACTCACTACCGCATTCTGGTGCTGTACCATGATACACTTGTACAGGACATCACCCTGAGAGGACAGAATCTCATTTCTCCACTTCGTCGCAATGCAAGGTCACTTGACTTCACCACAGAATCTGTGTTTACTCTTACCTCACATGAAACATTTTCCACTCTGGGTCGTGATTTTACCAACACTGATACAGAAGCACCATCAGCCCTTCCTCTGACCCCGAGTACCCCCCACACTCCTCCACCATGGCTCACGGTGACCCACGACAGAACCGACGCATCCGTTCAGACTCAGACTGATGCTGTAACTGAAGACCTGACGACTGAACACCCACCTGTCACTCCAGTCCTACCAGCCACTGAGGTGTCAGCAGACCTGTCATCTGATCAAATCACGCATGTGGTTCGAAGACTGAGTCCGTTCACCGAATACAAATTTAGCGTGTCAGCCAAAAACATCATTGGGGAAGGACCTTCCACCGAAGTTAcagtgaaaacaaatgaacaGGTGCCCAGCTCTGTTCAGAATGTGTCCTATCAGAACCTGTCGTCTACATCCATCCGTGTTTCATGGGAGCCGCCGCTAAACCCTAACGGCAAGATAACACACTATGCTGTGTATGCGCAAAATCTGCTTACTAACCAAGAGTTACGACAGATGACGGACACCACCACTGCTGTCCTCACAGGTCTGGACAAGTACAGCAGCTATAAGGTGCGAGTGGCGGCGTCCACTGCTGTGGGAGAAAGTCCTCTAACCAATGAAGACTACATCTACGTTGTGACACTAGAGGATGTGCCGGATTCGCCCCCACGGGGTCTGACCATAGTGAAAACCACCTCCTCCACCGCTACACTCTCCTGGTCTCCACCCGAGAAGCCCAACGGCATCATCCGCATGTATGAGATCTCCTACACCAACGGCACATACAGTAACACAGTCAACAGCACATCGGCCAGTGCAACGCTCCGATACCTgaagccacacacacactacaatgtGACTGTCCGTGCATTTACACTACTCGGacatggagagcagatttctgaAACACTACAGATGCTGTCAGGAGAGGATGtGCCTGGCAGTCCCCCTTATGATCTGTCCTATGAGAGCATCGGCTCCAGCTCAGTGAACGTATCCTGGTCTCCTCCACTCCTCGCAAACGGTGTCATCCTCTTCTATAATGTGGAATACTGGAACGCCACACAAAGCCTGAACCAAACCACACACATGCCATACATCGTCCTGTCTAACCTGCGAAAATATGCACACTACCGCATCAGCGTCCAGGCAGCCACACAGGTGGGCATGGGCAACCACACCAGCGAGATCCTCAACATCACCACACTGGAGGACGTACCCAGTTCTCCTCCAAAATTCCTAATTGCCAGGAAATTGTCAGATACTGAGGTAGAGTTGTCCtgggaggccccggaggaggccAACTCTGAGATTTTATACTACATAGTAAGAGTGTGGAATCTGAGCACTGAGTTTGTGGCCAATGTGACGGAAACATCAGTAGTTGTGAGTGTGGATGGACCGGGTCAGTATAACGCCTCTGTGAGCAGCTGGACTCGACTCGGGGATGGAGGATTGCTGATTTACATCACATTCAGTACTATAGAATCAGCCCCCTCTGACCCTCCACAGGATGTAGTATACACACTCCTTACCATCAGTACAGTGCGTCTCAGCTGGAGACCCCCAAATGAACCCAACGGCATCATTCAGTACTACACCATCTACTACACAGACAATAATACAGAGTACACAGagAGGGTTCCTGGTTCAGAGCACCAGCTGCTGTTGTCTGATCTGCAGGCGGGACAGGACTACAGTGTATGGATGAGTTCCAGCACCTCTGTTGGTGATGGGGGATTGTTCAGTCCCTCTCTAAACTTCACCACCTTAGAGGACGTGCCGAGTGGTCCCGTCCACAACCTCAGCGCCACCATCTACAGCTCCACAGCGGTGGTGATCAGCTGGGATCCTCCTCTGGAGCCCAATGGTAGAGTTTACTACCAGCTGAGCCTGCAGGAGGCGGGCATCACCCACCCGTCCATCAACCGCACAGTCAACATGACCATCACCAAAACCACCACCGACACCATCTACCTCTTCACCAAGCTCAGGAAGTATTTCCCCTACATCATAAACGTCACACCAGCCACGAGTGCAGGATCCGCTGTAAACCACACTACAATGCTACACCTGCGGACAGATGAAGATGTTCCGAGTTCTCCTCCATTGTCTGGATCAAACAAGAATCTCTCCAGCACCTCCATCCAGGTGTCGTGGTTTCCCCCAGTGGAGGCTAATGGCGAGATTATAGAGTATGCTGTGAATTTACAGGGTCCTTCCACCTCCAACAAAAACTACACCTCTGAGACACATCTGGTGCTGTCAGAACTCACTCCGTTTACACCATACAATCTCTCCATCGCTGCGGTCACTCGTGTCGGTACCGGCCCCCCGGTGGTTCTTTCACTACATACTGATGAAGCAGGCCCGATGTCTCCGCCACGCAATCTGACTATATTTAACCACACTGCAAATTCAGTGTGGCTTCAGTGGGAACCAAGTCCAGAGCCGAATGGAGTTGTACAGCTTTACGGATTCAGAATACTGGAATTGAATACAGACTCTTTCAGATACCAGAACTCATCTGATGCGTCCACACAAGCAGAACTGGGTGGCTTCAAACCTCATAATTCATATGAAATCAGTGTGTGCACATTCACTAGAGCAGGAAATGGAGATCAGTACAGCCTGCCTGTCTTATTCACCACCAATGAATCAGTGTCAGATGCTGTTGGGAATCTGAGCTGCTCTGGATTGGATTGGGATTCAGTCTACATGGAATGGGAGCTTCCGGATCACCCTAATGGAGAGATCCTGTATTACCTCATTCGCTCTGGAGATCTGGAGGATGAGGCTCACCCTGTGGTCCTCACACACACTGTGGCTCACACGCTCACTGGCCTTTCACCTCACGCTTTCTACCTCATCACTGTGGCTGCAGTAAATTCAGCCGGTGTGGGAGAAGAAGCAAACTGCAGCGCACACACTCCACCAGAGTCAGTTCCCGGTCCCTCCCATTCGCTGACCGTTACGGACGTCACCTCTGACAGTGTGTCTGTAAGCTGGCAGCGTCCCGTTCATGTGCCAGGTCTTTTGCAGGGTTACAATGTAGAGATCGAGCAATTATCCAGAAACTGTGAGCGGCAGCAGCAGCAAGTGGAGTCTTGTATGGAGGCTCAGATCTTGGAATGGGTTGAAGGAGAAACCACCAGAGCCACACTGACCTCTCTGCTCAAATACAGACAGTATCGTATCAGGGTCGTGGCCTTCACCAGAGCTGGAGCCGGAGAGCCTTCAGAGTGGATCTACACACAGACGCTCGCAGGAAACCCTGACGCTCCTCCTGGCGCTATCTCTGTGGTTCCTTCTGCCAATGGGTTGAAGATTGAGTGGGACAAACCATCAGTCATCTCGGGGCCCACATCATACATCATCGACATCACTGCTCTGGACGGTTCGGGATATAACATAACTTTAGTGCGGCATTCAGAAGAGATCAGGACAGTGATTGTCGGGAACCTGAGTGCATTTACTCTGCACTCTGTTACCATCACCGCCTTCACCGGGCCACTCTCCAACGCTCGCAGAGACGGCAAAGCATCTGAACCTGTCCTCATCAGAACCTTGGAGGATGAGCCCAAAGATCCTCCAAAAAACGTGACATTGACAGTGATTCCGGAGGAAGTGACGCGTGTTTATGTAACATTCTCCCCACCGGATGAGCCAAATGGAAACATCAGCGCATATCGTGTCGACATCTACCGCAACGGGCAGCTGGACTTCTTCATCAACAGCCTGTCTGTGATCAGCAACCCAAATAATACCATGACAGCCATAATTGATGGATTAAAAGGTGGATTTAATTACAGCATAAGgATAGCAGCTGTGAATGGAGCAGGTTTTGGACCAAGTTCGGAGGTTCATGTCACCACAGGTGTGAAAGCTCCTCCCAAACCGAAGAAGACGCCGCGGGCAGCTCTGAACAGTGCTGGTGTCATCATCTCAACCTCCAAGACCATCACCATCGAAATGCCTGAATGTTTCTTCACTGATGACCATGGACCAATTCAGAAAGTCCAGGTCATAGTTTCTGAACCCGCAGTGATGGACTACGGTAATCTATCCAACTGGAAGAGTGTTTTCCTCCACCCCACTGCTCCATACCTGACAGACGATGGCTTCCTGAACCCAGAGTGCCCTAAAAATTCTGAGCGCATGAGCTCAAGCACTAAGACGTATGTTATAGGAGAAGACGAGGGCTGCCTGTCTGAAGATGCAGAGACGCTTTGTAACGGACCTCTGAAACCCAAAACACATTATGTgtTCAAATTTCGAGCGACAAACATACGTGGCCAGTTCACAGACTCTGAGTACTCAGACAAAGTCAGAACTGCAGATGACCGCTTGCTGACCAGAGATGAGCAGATCATCCTTGGAGTCTTGCTGTCATTTTTTCTGGCGTTGTTTTTAATTCTGATTATATATGGATCTGTGAAGATCCACCGGAGGAAGAAGGAAGGAGGGACGTATTCGCCACGCCAAGCCGAGATTATTGAGACCAAATTCAAGCTGGATCAGCTCATCGCTGTGGCCGATCTGGAGCTCAAAGAGGAGAAGATTAATCGGCTGCTAAGTTACAGGAAATCCCTCAAGCCAATCAGTAAGAAATCGTTTCTTCAGCATGTGGAAGATCTTTGTGCCAACGACAACGCCAAGTTTCAGGAGGAGTTTGCTGAGTTGCCGAAGCTGCTGCAGGATCTGGCCACATCAGACGCTGACCTGCCTTGGAATCGCTCCAAAAATCGCTTCACAAACATCAAGCCCTACAACAATAGCCGAGTGAAGTTGCTGTCTGAGCCAGGAATGCCGGGTTCTGACTACATCAATGCCAGCTTCGTCTCTGGCTATCTGTGTCCTAATGAGTTTATAGCCACTCAGGGCCCTCTGCCGAGCACCGTCGCAGATTTCTGGAGGATGATTTGGGAAACTGGGACTAAAACCATCGTCATGCTTACTCAATGCTTTGAGAAGGGCCGGATCCGCTGTCATCAGTACTGGCCGGAGGACAATAAACCAGTCACTGTTTTTGCTGACATCATAATCACTAAACTCACAGAGGACGTGCGTCCTGATTGGACGGTGCGGGCACTCAAAGTGGAGCGGCATGGCAGCTACATGATTGTCCATCACTTTAACTACACCTCATGGCCAGAACACGGCGTTCCCGAATCCAGCTCCACACTTGTCCAGTTTGTCAAAGCCGTTCGCTCCAACAGAGGCCATGAAAACACTACCATCGTGGTCCACTGCAGTGCTGGTGTGGGCAGGACTGGAGTGTTTATAGCACTGGATCATCTCATCCAGCATTTGCGAGATCATGAATTTGTTGACATATACGGCCTGGTCGCAGAGCTGCGCAGTGAGAGGATGTGTATGGTGCAAAACCTGGCTCAATACATGTTTCTCCATCAGAGCACTCTGGATCTGCTGTCGGCCAAAGGAAACAGTCAGTCCATATGGTTTGTCAATTACTCCGCTCTGGAGAAGATGGACTCGCTGGATGCAATGgaggGTGACGTTGAATTGGAGTGGGAAGAGACGACCATGTAG

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:1990264 peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity biological_process
GO:0016311 dephosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-050419-183 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 73 and autosomal recessive nonsyndromic deafness 84A. Orthologous to human PTPRQ (protein tyrosine phosphatase receptor type Q).

Ensembl:

ensembl_id ENSDART00000143740

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027038 lncRNA upstream 479613 5837098 ~ 5839834 (+) True XLOC_012563
TCONS_00027037 lncRNA upstream 642081 5672914 ~ 5677366 (+) False XLOC_012561
TCONS_00027036 lncRNA upstream 642081 5672914 ~ 5677366 (+) True XLOC_012561
TCONS_00027034 lncRNA upstream 651831 5658481 ~ 5667616 (+) False XLOC_012560
TCONS_00027039 lncRNA downstream 343445 6750054 ~ 6757446 (+) False XLOC_012578
TCONS_00027040 lncRNA downstream 343778 6750387 ~ 6757446 (+) True XLOC_012578
TCONS_00027041 lncRNA downstream 373881 6780490 ~ 6785702 (+) True XLOC_012579
TCONS_00027042 lncRNA downstream 527415 6934024 ~ 6936237 (+) True XLOC_012581
TCONS_00025180 lncRNA downstream 593585 7000194 ~ 7012242 (+) False XLOC_012583
TCONS_00025156 mRNA upstream 53914 6155258 ~ 6265533 (+) False XLOC_012569
TCONS_00025157 mRNA upstream 54622 6162194 ~ 6264825 (+) True XLOC_012569
TCONS_00025155 mRNA upstream 176255 6126506 ~ 6143192 (+) True XLOC_012568
TCONS_00025154 mRNA upstream 235655 6054816 ~ 6083792 (+) True XLOC_012567
TCONS_00025153 mRNA upstream 237004 6039141 ~ 6082443 (+) False XLOC_012567
TCONS_00025163 mRNA downstream 73354 6479963 ~ 6499249 (+) False XLOC_012572
TCONS_00025164 mRNA downstream 73354 6479963 ~ 6499252 (+) True XLOC_012572
TCONS_00025166 mRNA downstream 129684 6536293 ~ 6550378 (+) False XLOC_012574
TCONS_00025167 mRNA downstream 129989 6536598 ~ 6550378 (+) True XLOC_012574
TCONS_00025168 mRNA downstream 151537 6558146 ~ 6619842 (+) False XLOC_012575
TCONS_00025158 other upstream 13782 6300608 ~ 6305665 (+) False XLOC_012570
TCONS_00025159 other upstream 13841 6300616 ~ 6305606 (+) False XLOC_012570
TCONS_00025160 other upstream 15891 6301046 ~ 6303556 (+) True XLOC_012570
TCONS_00025142 other upstream 779873 5531522 ~ 5539574 (+) True XLOC_012556
TCONS_00025141 other upstream 779992 5528981 ~ 5539455 (+) False XLOC_012556
TCONS_00025165 other downstream 118167 6524776 ~ 6524890 (+) True XLOC_012573
TCONS_00025178 other downstream 579267 6985876 ~ 6993004 (+) False XLOC_012582
TCONS_00025179 other downstream 579356 6985965 ~ 6994125 (+) True XLOC_012582
TCONS_00025186 other downstream 780632 7187241 ~ 7196213 (+) False XLOC_012585
TCONS_00025188 other downstream 803611 7210220 ~ 7216955 (+) True XLOC_012585

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_11970695_12013511.mRNA True 7282 mRNA 0.50 42 CI01000013 11970550 ~ 12013511 (-)
bowfin (Amia calva) AMCG00006732 True 9560 mRNA 0.45 52 CM030134.1 16954888 ~ 17022710 (+)