XLOC_012666 (zgc:173742)


Basic Information

Item Value
gene id XLOC_012666
gene name zgc:173742
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 14277003 ~ 14332060 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025310
ATGGAAAACGAGTTGAAAGACGATCCATGCTCGAGTGAAGAGGCATTTTCAGAAAAGCCCAAGAAAATGAAAGCAAAGGCCAAAGGCAAGACAAAGTCTCAGCGTGAAGGGAAGGAGAAAACGCACAGGAAGATGAAAGCATCGGAGGAGGAGATCATGGAAACTGAAGGCAGTGGTGACAGAAGGTCTCATGTAAATGTTAAGGAAGAGCCAAAGGAAGATCCAGACTTTGTAACAGAAAAGAAAGGGAAAAAGAGGAAAAGAAAGGCGGATAATACAGATGGACTCTTATCTAGCGCCGAAGCACCTTTgccaaagaagaagaagaagaaagttgCAGATGGACAGGAAAACGCTTCAACagcaaagcagaaaaaaatgaaggaaaaaaaagaaaagGTGAAAAAAGAGGAAGGAGAGCGTCCGGTCTCTACTAAGAAGAAAAAAACCAAGGAGGAGATTGAAGCAGCCAGAGCTCTCAAGATAAAGAAGAAAGAGGAGGAAGAGAAACAAAGATGGAGATGGTGGGAGGAAGAGAAGTATGAGAATGGAATTAAATGGAAGTTTCTAGAGCATAAAGGACCATATTTCCCTCCTGCGTATCAGCCCCTTCCTGATGATGTCAAGTTTTACTATAATGGAGAGCCAGTGAAACTCAGCCTGCCAGCTGAGGAAGTGGCCCTTTACTTTGCTCAGATGCTGGATCACGAATACACCACCAAAGAGGTCTTCCGCAATAACTTCTTCAAGGACTGGAGGAAGGAAATGACTCTAGAGGAGAGACAACTAATCAtggatctgaaaaagtgtgatttTGGGGAGCTCCATGCCATGCATAAGGAGAAGGTGGAAGCCAGGAAAAACCTGAGCAAAGAGGAGAAGTTGGTTAATAAAGAGGCCAATCAAAAAATAGTCGACGAATATGGGTTCTGTGTGTTGGACCACCATCGTGAACGCATTGGCAACTTTAAGATTGAACCTCCAGGTCTTTTCCGAGGCAGAGGAGACCATCCTAAACAGGGAATGCTGAAGAAGAGGATTCGACCTGAGGATGTTATCATCAACTGCAGCAAAGAATCTCGTATCCCAGAAGCCCCAGCCGGTCACAAATGGAAGGAAGTTCGTCATGACAAAACCGTAACATGGCTAGCAAGCTGGACGGAGAATGTTCAAGGATCCTGTAAATATGTAATGCTCAATGCCAACTCCAAACTTAAGGGTGAGAAGGATTGGGAAAAGTATGAAGTGGCCCGTAAACTGAAGACGTGTGTGGATGCCATCCGAACCCAGTACCAGGAGGACCTCAAGTCCAAACAAATGGGCACACGCCAGAGAGCCGTAGCCCTTTACTTCATTGACAAGCTGGCTCTGAGAGCAGGTAATGAAAAGGAAGAGGGCGAGACGGCAGACACCGTGGGTTGTTGTTCACTCCGCGTGGAGCACATCACTTTACACGATGCACTGGACGACCAGAAGTGTGTGGTAGAGTTCGACTTCCTGGGTAAAGATTGCATCCGCTACTACAACAAGGTTCCTGTGACCAAAAGGgtttttaaaaacctCAAGCTTTTCATGGAAAACAAGCAAGGAGGAGACGACCTCTTTGATCGACTCAATACTGCTTCGCTGAATAAACACCTGAGTTCCCTAATGCCGGGATTGACTGCAAAGGTTTTTAGGACATACAATGCTTCCATAACCCTGCAGCAACAGCTGAAAGAGCTCAGCAACATGAAGGATAATGTGCCGGAGAAGTTGCTCTCCTATAACAGGGCAAACCGTGCGGTTGCAGTTCTGTGTAACCATCAGCGGGCGCCGCCAAAGTCCTTCGATCAGTCCATGGCCAACCTGCAGGCAAAGGTAAAGCTGCACATGAAAGACTGGATAGTGATGAAACAGTTTAAGAAAAAACACTTCGATATGAGGCTGGTTTTTTATTAG
>TCONS_00025311
atgcagaggttttttttttttttgaggtacaattttgttttatttttttcacatcatCTGACAACATCTGAATATGAGACGCATAATTTTTCTGCACAGGAAATGACTCTAGAGGAGAGACAACTAATCAtggatctgaaaaagtgtgatttTGGGGAGCTCCATGCCATGCATAAGGAGAAGGTGGAAGCCAGGAAAAACCTGAGCAAAGAGGAGAAGTTGTTACAATCTTTTAATAGAGCGCTAGGAGACCATCCTAAACAGGGAATGCTGAAGAAGAGGATTCGACCTGAGGATGTTATCATCAACTGCAGCAAAGAATCTCGTATCCCAGAAGCCCCAGCCGGTCACAAATGGAAGGAAGTTCGTCATGACAAAACCGTAACATGGCTAGCAAGCTGGACGGAGAATGTTCAAGGATCCTGTAAATATGTAATGCTCAATGCCAACTCCAAACTTAAGGGTGAGAAGGATTGGGAAAAGTATGAAGTGGCCCGTAAACTGAAGACGTGTGTGGATGCCATCCGAACCCAGTACCAGGAGGACCTCAAGTCCAAACAAATGGGCACACGCCAGAGAGCCGTAGCCCTTTACTTCATTGACAAGCTGGCTCTGAGAGCAGGTAATGAAAAGGAAGAGGGCGAGACGGCAGACACCGTGGGTTGTTGTTCACTCCGCGTGGAGCACATCACTTTACACGATGCACTGGACGACCAGAAGTGTGTGGTAGAGTTCGACTTCCTGGGTAAAGATTGCATCCGCTACTACAACAAGGTTCCTGTGACCAAAAGGgtttttaaaaacctCAAGCTTTTCATGGAAAACAAGCAAGGAGGAGACGACCTCTTTGATCGACTCAATACTGCTTCGCTGAATAAACACCTGAGTTCCCTAATGCCGGGATTGACTGCAAAGGTTTTTAGGACATACAATGCTTCCATAACCCTGCAGCAACAGCTGAAAGAGCTCAGCAACAGTGAGTTGGATAATGTGCCGGAGAAGTTGCTCTCCTATAACAGGGCAAACCGTGCGGTTGCAGTTCTGTGTAACCATCAGCGGGCGCCGCCAAAGTCCTTCGATCAGTCCATGGCCAACCTGCAGGCAAAGATTGACAGCAGGAAGGAGCAGCTGGACTTGGCTAAGAAAGAGCTCAAGCAGGCCAAGAAAGAAGCCAAAGGGAGCTCAGACAACAAGCTtgtggtggagaagaagaagaaagcagTCCAGAGGTGTGAGGAGCAGCTGCTGAAGATGGAGGTTCAGGCTACAGACAGAGAGGAGAACAAACAGATCGCACTGAGCACCTCCAAACTCAACTACCTGGATCCACGCATCAGTGTGGCCTGGTGTAAGAACATGGAGGTGCCGCTGGACAAAATTTACAACAAAACCTTGAGGGATAAGTTTGCCTGGGCAGTCGACATGACTGAACTTGACTTTGTGTtctga
>TCONS_00025312
TGAAGGATAATGTGCCGGAGAAGTTGCTCTCCTATAACAGGGCAAACCGTGCGGTTGCAGTTCTGTGTAACCATCAGCGGGCGCCGCCAAAGTCCTTCGATCAGTCCATGGCCAACCTGCAGGCAAAGATTGACAGCAGGAAGGAGCAGCTGGACTTGGCTAAGAAAGAGCTCAAGCAGGCCAAGAAAGAAGCCAAAGGGAGCTCAGACAACAAGCTGCTGGTtgtggtggagaagaagaagaaagcagTCCAGAGGTGTGAGGAGCAGCTGCTGAAGATGGAGGTTCAGGCTACAGACAGAGAGGAGAACAAACAGATCGCACTGAGCACCTCCAAACTCAACTACCTGGATCCACGCATCAGTGTGGCCTGGTGTAAGAACATGGAGGTGCCGCTGGACAAAATTTACAACAAAACCTTGAGGGATAAGTTTGCCTGGGCAGTCGACATGACTGAACTTGACTTTGTGTtctgagtgtgtttgtttatccTACAATTCAGCCCAATATTTTATACCGTGTTCATTGAAACCTTGAATTAAATCGTGTGGCTCTTGTGTTCGTTCATATATTTTGcacatttatattgttttttttatatcgaTTATTCAACTTTAGCTATTCTTAAGTATTTTAAGAcagtttaataaatgttcatGCTTCATATGAAAAA

Function

symbol description
zgc:173742 Predicted to enable DNA topoisomerase type I (single strand cut, ATP-independent) activity. Predicted to be involved in DNA replication; chromosome organization; and chromosome segregation. Predicted to be located in chromosome. Predicted to be active in nucleolus.

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0007059 chromosome segregation biological_process
GO:0006260 DNA replication biological_process
GO:0006265 DNA topological change biological_process
GO:0031298 replication fork protection complex cellular_component
GO:0005694 chromosome cellular_component
GO:0005730 nucleolus cellular_component
GO:0003916 DNA topoisomerase activity molecular_function
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0016853 isomerase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6489 Predicted to enable DNA topoisomerase type I (single strand cut, ATP-independent) activity. Predicted to be involved in DNA replication; chromosome organization; and chromosome segregation. Predicted to be located in chromosome. Predicted to be active in nucleolus.

Ensembl:

ensembl_id ENSDARG00000004529

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025310 False 1941 mRNA 0.46 16 14277003 14329439
TCONS_00025311 False 1449 mRNA 0.47 12 14307059 14331863
TCONS_00025312 True 673 mRNA 0.44 4 14329231 14332060

Neighbor

gene id symbol gene type direction distance location
XLOC_012665 NA coding upstream 37544 14234369 ~ 14239459 (+)
XLOC_012663 cdh13 coding upstream 142968 13792490 ~ 14134035 (+)
XLOC_012664 BX649568.1 coding upstream 328079 13948810 ~ 13948924 (+)
XLOC_012662 NA coding upstream 761695 13494240 ~ 13515308 (+)
XLOC_012661 si:ch211-260p9.3 coding upstream 955941 13315739 ~ 13321062 (+)
XLOC_012667 si:dkey-246g23.2 coding downstream 10266 14342326 ~ 14421236 (+)
XLOC_012668 kcng4a coding downstream 145680 14477740 ~ 14530633 (+)
XLOC_012669 si:dkey-246g23.4 coding downstream 232025 14564085 ~ 14579787 (+)
XLOC_012670 wfdc1 coding downstream 263486 14595546 ~ 14617707 (+)
XLOC_012671 utp4 coding downstream 287484 14619544 ~ 14633308 (+)
XLOC_012654 NA non-coding upstream 1117249 13133657 ~ 13159754 (+)
XLOC_012652 NA non-coding upstream 1334983 12941800 ~ 12942020 (+)
XLOC_012675 BX649610.2 non-coding downstream 657019 14989079 ~ 14996705 (+)
XLOC_012680 NA non-coding downstream 1100646 15432706 ~ 15440860 (+)
XLOC_012681 NA non-coding downstream 1101404 15433464 ~ 15441472 (+)
XLOC_012682 NA non-coding downstream 1114563 15446623 ~ 15449445 (+)
XLOC_012683 NA non-coding downstream 1117445 15449505 ~ 15452652 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G82045 NA non-coding CI01000013 null 7339729 ~ 7340751 (+)
tiger barb (Puntius tetrazona) G63065 NA non-coding NC_056706.1 CM032075.1 11523022 ~ 11523638 (-)