Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025311 |
| length | 1449 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 12 |
| gene id | XLOC_012666 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 14277003 ~ 14332060 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006338 | chromatin remodeling | biological_process |
| GO:0007059 | chromosome segregation | biological_process |
| GO:0006260 | DNA replication | biological_process |
| GO:0006265 | DNA topological change | biological_process |
| GO:0031298 | replication fork protection complex | cellular_component |
| GO:0005694 | chromosome | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0003916 | DNA topoisomerase activity | molecular_function |
| GO:0003917 | DNA topoisomerase type I (single strand cut, ATP-independent) activity | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0016853 | isomerase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-6489 | Predicted to enable DNA topoisomerase type I (single strand cut, ATP-independent) activity. Predicted to be involved in DNA replication; chromosome organization; and chromosome segregation. Predicted to be located in chromosome. Predicted to be active in nucleolus. |
| ensembl_id | ENSDART00000186558 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00027070 | lncRNA | upstream | 67600 | 14234369 ~ 14239459 (+) | True | XLOC_012665 |
| TCONS_00027069 | lncRNA | upstream | 791751 | 13494245 ~ 13515308 (+) | True | XLOC_012662 |
| TCONS_00026876 | lncRNA | upstream | 791906 | 13494240 ~ 13515153 (+) | False | XLOC_012662 |
| TCONS_00027068 | lncRNA | upstream | 1147305 | 13133657 ~ 13159754 (+) | True | XLOC_012654 |
| TCONS_00026875 | lncRNA | upstream | 1365039 | 12941800 ~ 12942020 (+) | True | XLOC_012652 |
| TCONS_00025327 | lncRNA | downstream | 313861 | 14645724 ~ 14647889 (+) | False | XLOC_012672 |
| TCONS_00025328 | lncRNA | downstream | 316057 | 14647920 ~ 14649295 (+) | False | XLOC_012672 |
| TCONS_00025329 | lncRNA | downstream | 320933 | 14652796 ~ 14655181 (+) | True | XLOC_012672 |
| TCONS_00025332 | lncRNA | downstream | 361911 | 14693774 ~ 14697233 (+) | True | XLOC_012674 |
| TCONS_00026877 | lncRNA | downstream | 1100843 | 15432706 ~ 15436113 (+) | False | XLOC_012680 |
| TCONS_00025308 | mRNA | upstream | 173024 | 13837746 ~ 14134035 (+) | True | XLOC_012663 |
| TCONS_00025307 | mRNA | upstream | 174339 | 13792490 ~ 14132720 (+) | False | XLOC_012663 |
| TCONS_00025306 | mRNA | upstream | 985997 | 13315739 ~ 13321062 (+) | True | XLOC_012661 |
| TCONS_00025305 | mRNA | upstream | 993722 | 13309862 ~ 13313337 (+) | True | XLOC_012660 |
| TCONS_00025304 | mRNA | upstream | 999802 | 13300768 ~ 13307257 (+) | True | XLOC_012659 |
| TCONS_00025313 | mRNA | downstream | 10463 | 14342326 ~ 14400837 (+) | False | XLOC_012667 |
| TCONS_00025314 | mRNA | downstream | 10463 | 14342326 ~ 14421236 (+) | True | XLOC_012667 |
| TCONS_00025315 | mRNA | downstream | 145877 | 14477740 ~ 14530633 (+) | False | XLOC_012668 |
| TCONS_00025316 | mRNA | downstream | 197142 | 14529005 ~ 14530633 (+) | True | XLOC_012668 |
| TCONS_00025317 | mRNA | downstream | 232222 | 14564085 ~ 14579787 (+) | False | XLOC_012669 |
| TCONS_00025309 | other | upstream | 358135 | 13948810 ~ 13948924 (+) | True | XLOC_012664 |
| TCONS_00025284 | other | upstream | 2476039 | 11830905 ~ 11831020 (+) | True | XLOC_012642 |
| TCONS_00025282 | other | upstream | 2849729 | 11457213 ~ 11457330 (+) | True | XLOC_012639 |
| TCONS_00025273 | other | upstream | 3564896 | 10742049 ~ 10742163 (+) | True | XLOC_012635 |
| TCONS_00025271 | other | upstream | 3636321 | 10670661 ~ 10670738 (+) | True | XLOC_012633 |
| TCONS_00025324 | other | downstream | 311008 | 14642871 ~ 14649295 (+) | False | XLOC_012672 |
| TCONS_00025333 | other | downstream | 657216 | 14989079 ~ 14996705 (+) | True | XLOC_012675 |
| TCONS_00025343 | other | downstream | 1380566 | 15712429 ~ 15712545 (+) | True | XLOC_012689 |
| TCONS_00025358 | other | downstream | 1801821 | 16133684 ~ 16140348 (+) | False | XLOC_012697 |
| TCONS_00025367 | other | downstream | 2384088 | 16715951 ~ 16719190 (+) | False | XLOC_012703 |
