G454083


Basic Information

Item Value
gene id G454083
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 741677 ~ 758636 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU521318
TTTTGTTTTTTTTTTCCGTTACGTATATTCCTTTATTATATGTGTAAAAATGGCTTGTACATACATCTGCTTTTCTTTGTGCGTCACTGACAATAGCATATTTATATATACATACACAATTTCCTCTCACTTGCTACTTAACACAGTTCTTTCTTTGATATTTCTTCTTTCATTCCAGTCAAAGCGTTCCTCTCTTCCAGTAGATGTCATCTACATACACACATCTGGTTAAAATCTGCTCCTGTCCTTCAGTAAAATATCAATTTCTCCCAGGCCTGTGTACCATTATCCTGTAGCGTTACATCATTTCCTGAGCATGCCCAGTGAGTTTCTCCCCAGGCACTACAGCCAGCGGAGATCTGCTTAGTGGGTAAAGGTAAACGGGTTCATTCTCTCGCATAGCTCAGCAAATATAGCAGCTGTTTAGTGAAAATATCGTAAAAAAAGACAAACATCTTCTTAAGTTTTGTGTTTGGTGAATACGGTGTTTGGTTGCATTGTCACAGGATGGCTTGAATCCACTTTTCCAAGACCCGTTCTTGTCATTGACTACTTGAAATCAATTCAAATCTTGAAATTACACATTTTTTCATAGTTGAATATTTATACAATATGAATTCTCTCTCTTAACATTTCTCAATAAACTCAACAATACAACAATTCTTAAATTTCAAATGTATATGCACCTCTATTTTCTTCTTTTCATTCAGTGCACACGCTAAATTCTAGTTTTTGTCTGCATGTTGAATTCAGAGTTAAACAGGAAATGTTTCATATTCCTGCTCGTCTCTAACACACATACATAGTCCTGGCATAATGCGTTGTGTTGGTCCCGCATGTGACTCCTGAAGGTTTAGTGATACTCGCCCAAAAGTATACGTGACACATTTTCAAACACCAAGAAGGTGATGCAGCACGCTGGAATGACTCGCACCAAGTTCGGGACCATGCCTTTGTAAAAG
>TU521329
TCCTTTATTATATGTGTAAAAATGGCTTGTACATACATCTGCTTTTCTTTGTGCGTCACTGACAATAGCATATTTATATATACATACACAATTTCCTCTCACTTGCTACTTAACACAGTTCTTTCTTTGATATTTCTTCTTTCATTCCAGTCAAAGCGTTCCTCTCTTCCAGTAGATGTCATCTACATACACACATCTGGTTAAAATCTGCTCCTGTCCTTCAGTAAAATATCAATTTCTCCCAGGCCTGTGTACCATTATCCTGTAGCGTTACATCATTTCCTGAGCATGCCCAGTGAGTTTCTCCCCAGGCACTACAGCCAGCGGAGATCTGCTTAGTGGGTAAAGGTAAACGGGTTCATTCTCTCGCATAGCTCAGCAAATATAGCAGCTGTTTAGTGAAAATATCGTAAAAAAAGACAAACATCTTCTTAAGTTTTGTGTTTGGTGAATACGGTGTTTGGTTGCATTGTCACAGGATGGCTTGAATCCACTTTTCCAAGACCCGTTCTTGTCATTGACTACTTGAAATCAATTCAAATCTTGAAATTACACATTTTTTCATAGTTGAATATTTATACAATATGAATTCTCTCTCTTAACATTTCTCAATAAACTCAACAATACAACAATTCTTAAATTTCAAATGTATATGCACCTCTATTTTCTTCTTTTCATTCAGTGCACACGCTAAATTCTAGTTTTTGTCTGCATGTTGAATTCAGAGTTAAACAGGAAATGTTTCATATTCCTGCTCGTCTCTAACACACATACATAGTCCTGGCATAATGCGTTGTGTTGGTCCCGCATGTGACTCCTGAAGGTTTAGTGATACTCGCCCAAAAGTATACGTGACACATTTTCAAACACCAAGAAGGTGATGCAGCACGCTGGAATGACTCGCACCAAGTTCGGGACCATGCCTTTGTAAAAGCCCTCGATCCCCTCGTTGCTCCACGTTCTCCTGATGACATCCACGATTCCACTGTAGTTGTTGTGCTGGTCCTGCAGGCGAGCGCGCACCACCTGATATGGGTAGGTTACTGCTACAGCAAATATTTTGGAAATGGCTGCCATGGTGATGTATTCCAGTGGAGACAGCAGGGATTCAGATGGCATCTTCTTATATTTGTTCTGCTCTCTTTTTAGCCTTTCATAGGTCATGAACTGCAATGCAGCATGGGAAGTCCCCACCAGCCCAGGCACAAATCCCCTGTATAGTCCCGGGATACCCTCGTGACGGTATATTTTCACGAGGGCGTCCATCATTCCCTTGTACTGCTTCCGTGACGGGTCTGCATTGTACTGCAGCACCAGCCGGGTCTTTGTCACCCAGACCGGGTTGGTGAGGCAAAGCGTCAGAATGCCCGCCTCTGCTGCAGACACCAGGTGTTCGCCAGCACTCAGCTCTGTTTGTCGTCCCTCCTGTGTGTACGCTTTAATAGCATTATAAAAGAGGAAGTACAGGCCCCATGATGCACCAGCCCCCCAGATGTTGGGGGTCACACCCTGATAGAGACCTCTAATTCCTTCCAGCTTCCAGATGGTCTTCATGCAGTGCATCATGCCATCATATTGGGGTCGCATTTGCAGGCCATCACTTACTGCAAACCTGATTTTGATCAGATCCAGGGGGTGTAACACCATTGTAGAAATAACACCCCCACTGAGTCCAGCTGCAAGATTTTCATATTTGATGTGTTTAGAGAGTCGCATGAGGCTTGCTGTAATGGAAAAAGAAGAACCAGAGGAGTCTGCAGCGACTGCAGCATGTCTCTGCCTGGAAATGGTAGCAGTCATGTTTGTTTACGTACTAAAGACGAACACCCTGAGCGCGCAAGAGGCAGCAAAAACACCGTGAGTGCAGACAGCGACACACTAACCCTGTTATTAAAGAAAAAACATCAAGTAGCCAATGCCCCTATTAGATTCAATAGCCACCGCAGGGCCATTATTGAGCGCTATCATTTCTTTCAACGACTGACCTCCACTCCTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU521318 False 962 lncRNA 0.37 2 741677 745960
TU521329 True 1998 lncRNA 0.44 7 745027 758636

Neighbor

gene id symbol gene type direction distance location
CI01000320_00672652_00673710 MC5R, MC5RA coding upstream 66903 672652 ~ 674774 (+)
CI01000320_00645879_00646515 NA coding upstream 92808 645879 ~ 648869 (+)
CI01000320_00596242_00605090 RNMT coding upstream 136441 596116 ~ 605236 (+)
CI01000320_00531076_00581054 LDLRAD4A, LDLRAD4 coding upstream 159271 531076 ~ 582406 (+)
CI01000320_00474983_00479177 CEP192, SEH1L coding upstream 262443 474983 ~ 479234 (+)
CI01000320_00783563_00803806 NA coding downstream 24927 783563 ~ 804355 (+)
CI01000320_00833426_00905113 NA coding downstream 74733 833369 ~ 905692 (+)
CI01000320_00915850_00922116 NA coding downstream 154457 913093 ~ 922286 (+)
CI01000320_00998626_01009523 NA coding downstream 239990 998626 ~ 1010590 (+)
CI01000320_01018345_01040605 ZFPM2B coding downstream 258527 1017163 ~ 1041214 (+)
G454076 NA non-coding upstream 115471 625957 ~ 626206 (+)
G454074 NA non-coding upstream 117180 624289 ~ 624497 (+)
G454070 NA non-coding upstream 126943 614510 ~ 614734 (+)
G453873 NA non-coding upstream 200835 535081 ~ 540842 (+)
G454052 NA non-coding upstream 333135 408321 ~ 408542 (+)
G454093 NA non-coding downstream 48254 806890 ~ 853818 (+)
G454091 NA non-coding downstream 80108 838744 ~ 844185 (+)
G454149 NA non-coding downstream 173915 932551 ~ 933335 (+)
G454157 NA non-coding downstream 210276 968912 ~ 969132 (+)
G454174 NA non-coding downstream 219949 978585 ~ 978815 (+)
G454251 NA other downstream 455942 1214578 ~ 1215032 (+)
G455129 NA other downstream 1431681 2190317 ~ 2197008 (+)
G455393 NA other downstream 2341188 3099824 ~ 3100289 (+)
CI01000320_03117532_03169741 NA other downstream 2358911 3115820 ~ 3169749 (+)
G455404 NA other downstream 2362180 3120816 ~ 3121105 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location