XLOC_000138


Basic Information

Item Value
gene id XLOC_000138
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10645364 ~ 10680841 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003036
GTTGCTTGTAACAGTGGTTGAGCTGTCTTTGTTGTAGGTTGTGAAATCATCTGACCTGAAGTGCTTCAGCTCTTGTTCTCTGGATTTCCACTGGATTGTTGGAGCTGGTTTACCAGTGGCTGAACATGAAACCACAACTTCTGTGTCAGAAGTGTCTGCAGGATTCACTGCCGCTGTTATTTCTGAGCTACCTTTAACAGTGACGCACAAGGTTTCTCGTTTGGGTCCTGTTGGATACACTTTAAAGGAACAAATGTAGCAAGCCTCATCTTcaaatgttgtgttttttatctCAATAGTTGTTGAATTAAACGATGCTTGGAAAATGATCTTTCTGACAAAGTCCTCATCCACATTATCCTTGAAGCGCTCGCTGAACGTGGCCAGAGTGTGTACATCCTGCGCACGCACCCGCTGCCATGTCACCTGTCTGACGCCTGACACGAACGGCAAAGTACATGAGAGAGAAGCATCCTGACCAAACACAACAGCCGTGTCTCCTCGTGCCACTATTTCTAAAGGATAAG

Function

GO:

id name namespace
GO:0033986 response to methanol biological_process
GO:0071405 cellular response to methanol biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003036 True 527 lncRNA 0.46 2 10645364 10680841

Neighbor

gene id symbol gene type direction distance location
XLOC_000136 NA coding upstream 27434 10617524 ~ 10617930 (+)
XLOC_000134 dachb coding upstream 148555 10378706 ~ 10496809 (+)
XLOC_000135 NA coding upstream 182482 10462044 ~ 10462882 (+)
XLOC_000133 AL935188.1 coding upstream 281513 10363720 ~ 10363851 (+)
XLOC_000132 pip4p1b coding upstream 320339 10318077 ~ 10325025 (+)
XLOC_000140 MPC2 coding downstream 3002 10683843 ~ 10696603 (+)
XLOC_000141 atp1b1b coding downstream 39453 10720294 ~ 10739221 (+)
XLOC_000142 cnga3b coding downstream 90616 10771457 ~ 10776547 (+)
XLOC_000143 NA coding downstream 100087 10780928 ~ 10787317 (+)
XLOC_000144 knstrn coding downstream 426847 11107688 ~ 11117930 (+)
XLOC_000121 NA non-coding upstream 693491 9946664 ~ 9951873 (+)
XLOC_000120 NA non-coding upstream 730734 9886955 ~ 9914630 (+)
XLOC_000145 CU929103.1 non-coding downstream 699656 11380497 ~ 11380611 (+)
XLOC_000146 CU929311.1 non-coding downstream 788695 11469536 ~ 11469650 (+)
XLOC_000152 NA non-coding downstream 1252476 11933317 ~ 11933676 (+)
XLOC_000155 NA non-coding downstream 1365651 12046492 ~ 12048509 (+)

Expression


Co-expression Network