CI01180000_03077007_03078238


Basic Information

Item Value
gene id CI01180000_03077007_03078238
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3076607 ~ 3078799 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_03077007_03078238.mRNA
ACTATTAAACGTCCCAGTTAACCATTTCCTCTACTAAACAAAGACATGCAGATAACAGCGAGTTCTCTAAATGATAAAGTCTTTCAAGCGGCAAACACAATCATCATTATTCGTTCAACACAAGCTTGTAGAAACAAAAACAATCCACAGGAGGGTTTCCAAAGGAGAAGCCAAGAGTGATTCAGAACCGAATCTACAGTAAAGTGCATGAAGCTGACGTGAATCAAACACGGCTCTTCCTGACCACACCGTTCATTTCCTATCTGATTAATTAACTGCGAAAGGAAAAGCACTTTAAATGTAGATGATCCAAGCAAAACATGGAAAACGCTGTATGAATATGGAAAAGAGATTAAAGTAGCGCTCTGAAAAACGAGAACGGAAAGCATGTGTGGACTGAGATGAAGAGCGTCGGTCTCATTAGCTCTTCATCTGTGGATTCAAACTCGTCCAGAAGGAAGGAAGATCTCACTGCTGCCAGGCACAAAACACTGGAGAAGAGGAGGAGATCTGCTCATTTCCTGTGCACAGAGGAGAATTTCAGAGATGCTAACAGACCATCAGTGACCCTCACAGAACATCAGATACCCTCAGAGAACCTCACAGACCCTAAGAGATGCTCAGAGACCCTAACAGACCCTCAGAGAACATCAGAGACCCTCACAGAACATCACAGACCTTTACAGAACCTCAATGACCCTCACAGAGCCTCAGAGACCCTCACAGACCCTCAGAAAATATCAGACACTTACAGAGCCTTAGAGAACATGAGATTCTCTCAGACCCTCATAGAACATCAGTGACCCTCACAGAACATCAGAGATGCTCACAGACCCTCACAGACCATCAGTAAACCTCACAGACCCTAACAGACCCTCATAGACCATCAGTGACCCTCACAGACCCTTATAGACCATCAGTGACCTTCACATAACCTCACAGACCCTCAGAGAACATCAGAGACCCTCACAAAACCTCAGAGACCCTTTTAGACCATCAGTGAACCACACAAACCCTCATAGACCATCAGTGACCCTCACAGACCCTAAACAGACCCTCATAGACCATCAGTGACCTTCACATAACCTCACAGACCCTCAGAGAACATCAGAGACCCTCACAGATCCTCAGAGATGTGCAGAGACCCTCACAGAACATCAAAGACCCTTAAAGACCCTCACAGACCTGTGTGGTCTTGCTGTATCATTAGAGGAATTAATCTGCATTAGCTTTAATTAACATGTAACTGCTGCTGTCATTAACCAGCACTCAGAGAGGCTGCTGGGAATGAGAGTGAGAAACAGTTAGTGCCTTCTTGCATCCGAAAAACCTCCACACAGATTATTCTGATGTGCTTATTAAT

Function

NR:

description
Repetitive proline-rich cell wall protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_03077007_03078238.mRNA True 1363 mRNA 0.45 2 3076607 3078799

Neighbor

gene id symbol gene type direction distance location
CI01180000_02998131_03010201 NA coding upstream 66104 2998131 ~ 3010503 (+)
CI01180000_02951792_02968343 STK32C coding upstream 108264 2951792 ~ 2968343 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 coding upstream 384424 2689271 ~ 2693221 (+)
CI01180000_02613130_02639905 NA coding upstream 436685 2612278 ~ 2639922 (+)
CI01180000_02574027_02588521 NA coding upstream 487783 2574027 ~ 2588824 (+)
CI01180000_03149731_03154047 NA coding downstream 70248 3149047 ~ 3154088 (+)
CI01180000_03210894_03214195 LBH coding downstream 132095 3210894 ~ 3214720 (+)
CI01180000_03223456_03224643 LCLAT1 coding downstream 144603 3223402 ~ 3224643 (+)
CI01180000_03250547_03255754 KLHDC3 coding downstream 171748 3250547 ~ 3255868 (+)
CI01180000_03280581_03284614 NA coding downstream 201549 3280348 ~ 3284621 (+)
G680331 NA non-coding upstream 24582 3051549 ~ 3052025 (+)
G680349 NA non-coding upstream 108850 2966958 ~ 2967757 (+)
G680309 NA non-coding upstream 172443 2903841 ~ 2904164 (+)
G680308 NA non-coding upstream 173938 2902448 ~ 2902669 (+)
G680306 NA non-coding upstream 180674 2895526 ~ 2895933 (+)
G680317 NA non-coding downstream 44992 3123791 ~ 3179566 (+)
G680424 NA non-coding downstream 86689 3165488 ~ 3169456 (+)
G680441 NA non-coding downstream 134214 3213013 ~ 3280015 (+)
G680705 NA non-coding downstream 308428 3387227 ~ 3387686 (+)
G680706 NA non-coding downstream 309489 3388288 ~ 3388573 (+)
G679324 NA other upstream 679247 2388867 ~ 2397360 (+)
G679076 NA other upstream 1277174 1795170 ~ 1799433 (+)
G678946 NA other upstream 1520456 1518353 ~ 1612547 (+)
G678637 NA other upstream 1920935 1149551 ~ 1155672 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 474478 3569165 ~ 3573135 (+)
G680736 NA other downstream 686892 3765691 ~ 3784441 (+)
G681137 NA other downstream 1704506 4783305 ~ 4785631 (+)
G681268 NA other downstream 2291611 5370410 ~ 5373762 (+)
G681592 NA other downstream 3394236 6471995 ~ 6478999 (+)

Expression


Co-expression Network