CI01180000_03250547_03255754 (KLHDC3)


Basic Information

Item Value
gene id CI01180000_03250547_03255754
gene name KLHDC3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3250547 ~ 3255868 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_03250547_03255754.mRNA
GGCGCAGCGGTGCGGCGGTGGCCGAGCGTGGGATGTTACGCTGGACGGTGCACCTGGAGGGCGGCCCTCGGCGGGTCAACCACGCGGCGGTGGCGGTCGGACACAAGGTCTACTCGTTCGGCGGGTACTGCTCGGGAGAAGACTACGACACCCTGAGGCAGATCGACGTGCATGTCTTCAACACGGTGTCCCTGCGCTGGACGAAGCTGCCGCCCGTGCGGACCGGAGGCCGTGAGCACACTCGTGAAGTGCCCTACATGCGCTACGGACATACTGCGGTCCTGCTGGACGAGACCATCTTCATCTGGGGCGGGAGGAATGACACAGAGGGCGCGTGTAATGTGCTGTATGCCTTCGACGTCGATCAGCACCGATGGTTCACACCCAAGATCTCGGGAACGGTTCCAGGCGCCAGAGACGGACACTCAGCATGCGTTCTAGGAAAAGCCATGTACATCTTTGGCGGATATGAGCAACTGGCCGACTGTTTCTCCAATGACATTCACAAGCTGGACACCAGCAGCATGTGCTGGTCACTCGTGAACGCCCGGGGAACGCCGGCTCGATGGAGAGATTTTCACTCGGCCACCATCATCGGCACTAAGATGTTCGTGTTTGGAGGGAGAGCGGATCGATTCGGCCCCTTCCACTCAAACAACGAGATCTACTGCAATAAAATCAAGATCTTCGACACGGAGACCAACTGCTGGCTGAACACGGCGTCTGCGCAGCTGCTGCCCGAGGGCCGACGGAGCCATTCAGCCGTTGCTTACAATGGAGAACTGTACATATTCGGTGGTTATAATGCTCGTCTGGATCGACACTTCAACGACCTCTGGAAGTTCAATCCAGAGGCATTCTCCTGGAAGAAGGTGGAGCCAAAGGGTAAAGGTCCGTGTCCCAGGCGGAGACAGTGCTGCTGTATGGTGGGAGATCGCATCATCCTCTTCGGAGGAACCAGGTGAGCACAGCACGTCACATGACTCTGAATGCTGATGTTGCGTGTTTTGTTTGGAAGTGAATTTACTGGGAAACGAACATGACCCAAAACCATGTGATGCACATGTGCTCACTGAGC

Function

symbol description
klhdc3 Predicted to enable chromatin binding activity. Predicted to be active in cytoplasm. Orthologous to human KLHDC3 (kelch domain containing 3).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_03250547_03255754.mRNA True 1078 mRNA 0.57 7 3250547 3255868

Neighbor

gene id symbol gene type direction distance location
CI01180000_03223456_03224643 LCLAT1 coding upstream 25904 3223402 ~ 3224643 (+)
CI01180000_03210894_03214195 LBH coding upstream 35827 3210894 ~ 3214720 (+)
CI01180000_03149731_03154047 NA coding upstream 96459 3149047 ~ 3154088 (+)
CI01180000_03077007_03078238 NA coding upstream 171748 3076607 ~ 3078799 (+)
CI01180000_02998131_03010201 NA coding upstream 240044 2998131 ~ 3010503 (+)
CI01180000_03280581_03284614 NA coding downstream 24480 3280348 ~ 3284621 (+)
CI01180000_03286578_03289266 NA coding downstream 30195 3286063 ~ 3289303 (+)
CI01180000_03425920_03442839 SUFU.L, SUFU coding downstream 169646 3425514 ~ 3444183 (+)
CI01180000_03447461_03475999 TRIM8A coding downstream 191476 3447344 ~ 3476102 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 coding downstream 313297 3569165 ~ 3573135 (+)
G680317 NA non-coding upstream 70981 3123791 ~ 3179566 (+)
G680424 NA non-coding upstream 81091 3165488 ~ 3169456 (+)
G680331 NA non-coding upstream 198522 3051549 ~ 3052025 (+)
G680349 NA non-coding upstream 282790 2966958 ~ 2967757 (+)
G680309 NA non-coding upstream 346383 2903841 ~ 2904164 (+)
G680705 NA non-coding downstream 131359 3387227 ~ 3387686 (+)
G680706 NA non-coding downstream 132420 3388288 ~ 3388573 (+)
G680767 NA non-coding downstream 193217 3449085 ~ 3460969 (+)
G680797 NA non-coding downstream 246241 3502109 ~ 3502348 (+)
G680743 NA non-coding downstream 261757 3517625 ~ 3524426 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 555111 2689271 ~ 2693221 (+)
G679324 NA other upstream 853187 2388867 ~ 2397360 (+)
G679076 NA other upstream 1451114 1795170 ~ 1799433 (+)
G678946 NA other upstream 1694396 1518353 ~ 1612547 (+)
G678637 NA other upstream 2094875 1149551 ~ 1155672 (+)
G680736 NA other downstream 509823 3765691 ~ 3784441 (+)
G681137 NA other downstream 1527437 4783305 ~ 4785631 (+)
G681268 NA other downstream 2114542 5370410 ~ 5373762 (+)
G681592 NA other downstream 3217167 6471995 ~ 6478999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006303 klhdc3 coding NC_007124.7 CM002897.2 51981764 ~ 51988216 (+)