CI01180000_05249220_05271562 (PDZD7, PDZD7A)


Basic Information

Item Value
gene id CI01180000_05249220_05271562
gene name PDZD7, PDZD7A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 5246669 ~ 5271562 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_05249220_05271562.mRNA
GCAACCCTTAGCTTTCCAGAATGCAATAATTGCTGATATCACTTTACCTCCCATGGGAAATTACTCATTGCGCGGCTGGGTTCTCACAGATCTTTCTCTGTCGTCTTGGATCACTGGCAGGGCTCAGGCCCTGGATGAGGGTCAGAAGGGAGGTCGGCACTTTGCCATGGCTCATTCGTCTGACGCGGCACGCAAAGACATGACGAATGGGGCTCATCCCAGTGCCCAGCCAGGGCCCTCGGGCACCTCTACCCTCCCACGCTACCTGCACAAGAAGCAGCAGCGCCAGAGAGGAGTGAGATCTTCCTCCCCTATGGGCAGGGTCATCATCATCAACTCACCTGTCGATGGCGGGGATGACTGTGAAGACATTCACACAATTACTGTAGACAAAAGTGAGGATGGCAGGCTGGGCTTCAGTGTGCGGGGAGGCTCTGAACACGGCCTTGGAATCTTTGTCAGCAAGGTGGAGGATGACAGCACTGCAGGGTTGGCAGGCTTGTGTGTTGGGGATAAGCTGGTCGAGGTGAATGGCATAAGTCTGGAGAGCATCACCATGAGCAGTGCTGTAAAAGTCCTGACGGGAAACAATCGTCTGCGCATGGTGGTAAGACGTGTGGGGAAGGTGCCTGGTATCCGCTATTCAAAAGAGAAGACTACATGGGTAGATCTGATTCACCGAAGGATGGTAGTGGAAGAAAGTGGTCGCACACCTTCAGAGGCCAGTTCAGACGGAGCCCTGCGCAGAATAGTGCACCTTTACACAACCTCAGATGACTACTGCCTGGGCTTCAACATCCGTGGTGGCAAAGAGTTTGGCCTGGGCATATATGTCTCAAAGCTGGACCCTGGTGGCCTGGCAGAGCAAAATGGAATTAAAATGGGGGATCAGATTCTGGCAGCCAATGGAGTGAGTTTTGAGGACATCACACACAGCAATGCAGTAGAAGTGCTAAAAAGTCACACTCACGTGATGCTGACCATCAAGGAGGCTGGTCGATATCCTGCTTACAAGGAGATGGTGGCGGAGTACAGTTGGCTTAATAAATGGGCTAATGGAGGTCAGCCCTCTTCATCCCAGGGTTCAGACTCCTACTCCTCCACTTCCTCTCTCTCTTCCGGAACGCCGGTCAGCTCTCTCAGCGGCCTCTCGCAGGTCATGTTCCCTCCTGCATTCGGCTCAGAGATGGTGGATGTCTGTATCTCCACCGAGGACCGCTCACGCCGGCCCAGCTCTGAACGGATAGAGACCGCCATCCAGACTGACCCACAGGAGCTTGACACCACATCAAGATCCAGTAGGGTCATAACCACAGAAACCAGCCGAACAGTTGGTGAAACTGTCCTGTTGAAAGATACTGCGATCCGGAGCGCGACCAGCCACTCTCGGACAAGGACCTTCTCTGCTGGGGATAAAGAGACTCTGGAATCACCTAAAACGGCAGTCCTGATGGCTCTCAGCAAGCCTCGGAAACCCATCCGCCGATCCCAGAGTCACATCACTGTGTCAGGGGACAAGCAGAAGAAAAGCAAACATCAGAAGGACAAGGTAGACAAGGAGGGAAGCACCCTGCAGCGCTCCAAAACCTTTGTCAGCTTGCTCTTTAAAAGTGGACGCAGGAGGGAAAGGTCGTCTTCTAGAGACAGGAAGGACACCGGGACAGGGGATGGACACAGAGGAAGATCCAAATCCCCAAAACATTTAGATAACGAACCGGGTAAAGAGCGAGGTCGACCCATAATTAACCTGTTGAGTTCTCCCAGAGAGACTCGTGCTGGTATGAGGGAGCACAGCGCCGTCCCCAGCCCGGAGACCATGGCTATGTTGGAGGACATGGCTCGCAAGCTGCTCAATGAGGATGAAGTGGCCGCTGTCATGAGACACTGTAAAAGGGTTCTGGTTGAGCGTGTGGTTGAGGATCTGGTACGCCCCCTGCTGGCCATCTTGGACAAGCCTGAGAAGCTTCTGCTGCTGAGGGAGATCAGGATGATCATCCCTCCCACAGATCTGGGCCGTTTTGACAGTATGGTTTTACCCTTTGAGCTTGAAGCATATGACATACTGAAAAGCCGCTCTGGGAGGTCTCCTGTCCTGCGTTCTCCTCGTCATGGTGGAACACCCCGTCGCCATCTAATAACGCCCATCCCAGGTTATAGGGGTGGATTCCACCTTCAGCCGGTGCAGGATCTGGAGAGAGAACGGCAGCTTATTGAAGATATGGAACGATTGCGTTTGTCAGGATTACCGACTGGACGACTTCCTCCTCCTCGGGCCTTCACACCTCTCTTGGATGTACCGGTGGACACCTACATCACAGACTCGCTCCGTAATCGCTCCTTGAGTCCTGCTCGGTCTGCATGGCCGCACTCAGAGTCCTCTCACAGCACAGAACGCCACGGACGCTCCCCCCAGAGAAGAGACAACGGTTTCCCCCAGACATCACACCATGACTCTTTATCCAGCAGGGGCGATTCTGTCCCAGAGCGAGGGAGATCCCCTTATAGAAATGGACATAGAATGAAAACGGACAAATCTCAGAATGGTAAAGAGGTCAAATATACCGTAATGAGTGCACGTCACCGGAGCAGGACACCATTGACACAGGTGTTTACGCCCAGCTCAGATCAGGACTGGAAAGAACCAGTGAATGGACACTCAGAAAGCCAAGAAAGCCCACCAGAGCAGGAGTATGAACTAACTTCGGTTACCATCTCTAAGACCAAACAGTCCCTGGGAATAAGCATCTCAGGTGGCATTGAGTCAAAGGTGCAGCCAATGGTGAAGATAGAGAAGATCTTTCCAGGAGGAGCGGCCTCTACCAGTGATGTTCTGAAGGGAAGACGTATCCTTGTCGCTTACAGCCTATCAGGTGACAGCACTTCCCTGGCCTGCTCTGAGAGGCTTGTGTTGCCACACTCAGGAGATCTGGTGTCAGGCTCAAAACCCTTCAGTTGCCAAGAACATCCACTCATCTCTGGCCTCCACCTGGGCTTGGCAGCGTTCTGTCTGCACTCTGCCAGGAATACTCAGGGATGTGTCAGAAAAACAGACATCTGCATCAAAGATCAAGCTGGATTCGAGCTGGTGTCAGTAGATGGAGAGTCCCTCCAAGGTGTCACACATCAGCATGCGGTGGACGCCATTCGGAGGGCTTTCAGTAACAAGGCCAAAGACCCCATGGAGTTCATCGTCAAAGTTCCCAAGAACCCAAGAGGCTGACTGAAATCAGCCTGATACCAAATGTGTTTGCGCTAAAGGCCCTGATATACTCACGGCAAAGTTCTTTTTCATTCTTCACTCAGTGGGAAAAAGAATTTTGTAGCGGTATACCGTTAGCGAACATCCTGACGCTGATGGAAACAGCTTTTAGATGAACATATTAAGATGTTAGATGAATAAGCTGTGCGCTTTCCTCACAATAACAAAATAAACACAACAAAAATGACAGATCATAACGAAGTGGACATGTTTGCATGAGCTCTGCAATTCAGCACTCCAGTCAAGTCAGTTCACGTTCATTTATAGCACTTTATACAATAGATTGCTTTAAAGCAAGCAGCTTTACAGTATTAAACACGAAAAAGTGTTACTTTCAATTAGAATTACAACTTCAGTTTTTACTATAAAGCCTCTCTTTAGTGTGTTCATGTTTGTACTTGATGGACTGTCACTGAACAGAAGAAATGGAGCAGAGAAGATTTCCATGTCAAAGAAGGCGGAGCCACAGAGCCACACCCACCTATTCCGTAAACGCCACGGACCAATGGTAGTTTGAAGGCGTTTACCAGCCGGAGCAAACTTTTCAGGAAAGTTCACTTTGGCAAGCTGTTTCAAACTTCAGAACAAAATCCAAACAAACTTCGTTTTCGGCCTGATTTTCTTTGAAATTGTCACATCAGTTTGTTCTTTCATTTTGCTAGAAGTATATTGGGGCCTTGATGCTGCTGGGTATAAACAGAGGGTACATGCTTGATTTGGAAGAGAAATAATGCCATCATGTCCAGTGGGGGTCGAGGCAGACCCCTGAGCAATAATTTAAAGGGTTAGTTCATCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTCGTTCCATAAGACCTTCGTTCATCTTCGGAACACAAATTAAGATATTTTTGATAAAATCCGATGGCTCAGTGAGGCCTGCATTGACATCAAGACAATTAACACTTTCAAACGCCCATAAAGGTACTAAAGACACATTTAAAACAGTTCATGTGATTGCAGTAGTTCAACCTCAGTGTTATGAAGCGACGAGAATACTTTTTGTGTGCCAAAAAAACAAAATAATGACTGTATTCAACAATATCTAGTGACGGGTGATTTCAAAACACTGCTTCATGAAGCTTCGAAGCTTTACAAATCTTTTGTTTCGAATCAGTGGTTCGGAGCCTGTCAAACTGCCAAAGTCACGTGATTTCAGTAAACGAGGCTTCGTTACGTCATAAGTGTTTCAAAATTTCAAAGGTTCACCACTGGGGGGCGTGACTTTGGCAGTTTGATACACGCTCCGAACCACTGATTCGAAACAAAAGATTCGTAANNNNNNNNNNNNNNNNNCAGTGGTTCGGAGCCTGTCAAACTGCCAAAGTCACGTGATTTCAGTAAACGAGGCTTCGTTACGTCATAAGTGTTTCAAAATTTCAAAGGTTCACCACTGGGGGGCGTGACTTTGGCAGTTTGATACACGCTCCGAACCACTGATTCGAAACAAAAGATTCGTAAAGCTTCGAAGCTTCATGAAGCAGTGTTTTGAAATCGCCCATCACTAGATATTGTTGAATAAAGTCGTTATTTTGTTTTTTAGGTGCACAAAAAGTATTCTCGTCGCTTCATAACACTGAGGTTGAACCACTGTAGTCGCATGAACTATTTTAAATGTCTTTAGTAGCTTTCTGGGCATCTGAAAGTGTTAATTATCTTGCTGGCAATGGAGGCCTAACTGAGACATCAGATTTCATCAAAAATATCTCAATTTGTGTTCTGAAGATGAATGAAGGTCTTACAGCTGTGGAACAACATGGGGGTGAGTAATTAATGACAGAATTTTCATTTTTGTGTGAACTAACCCTTTAAAAATGGGCTTCCACAGAGTGCTATTGGCCATTCACAGATACTGACCTTTTCTCTGTTGAAAGTTATTCACTTTTGAATCTTTTCTATCCTAATTCAGATCTATTCTGTTTACATGAATACAAATAAAA
>TU804577
TCAAAAATATCTCAATTTGTGTTCTGAAGATGAATGAAGGTCTTACAGCTGTGGAACAACATGGGGGTGAGTAATTAATGACAGAATTTTCATTTTTGTGTGAACTAACCCTTTAAAAATGGGCTTCCACAGAGTGCTATTGGCCATTCACAGATACTGACCTTTTCTCTGTTGAAAGTTATTCACTTTTGAATCTTTTCTATCCTAATTCAGATCTATTCTGTTTACATGAATACAAATAAAACAGTCATAACATGTCACGTCCACATTTAAAGGATCCGAAACCCTGTATAAACATGATTGTGGGTTTCTATTTTTGGTTGTGGTTTAAGCCTAGGACAAGATAAGAGCGCACTGGCATGACATGCTGATAATCATAAATCATATCACCTCCCATCCTGGCTAGTCTCCACAGTCATGCCTGAAAGAGATTACACATGACCACAGTATGGATTGAGATTGAGATTAGGTCTTTTTTTCTTTTTCTTTTAAATTGCTGGTTTGGTTTAGTGAACGTCTGGGGGATTATTACAAATGATGATCCCTGTCTCACTTTACATCCTGTGCTCTAATCTAATGTCTATTTTTGGCAATTAATGCATACACTTGCATTTTTTATATTTGTGCCTTAATGCTGCACATATGGACTGTGCAATTAAGATATAAACGTTGTGATGATTGTAGGATCAGTGTTATATACTGAACGTTTTACTCTGTAAGCATCTAAAGAAAGCATATAAAAGCATCTGGTCTGCATTTTTGCAATTCGTTTTATTACAAAAGGC

Function

symbol description
pdzd7a Acts upstream of or within eye photoreceptor cell development and inner ear receptor cell development. Predicted to be part of stereocilia ankle link complex. Predicted to be active in plasma membrane and stereocilium tip. Predicted to colocalize with photoreceptor connecting cilium and photoreceptor inner segment. Is expressed in hair cell and retina. Human ortholog(s) of this gene implicated in Usher syndrome type 2A; Usher syndrome type 2C; and autosomal recessive nonsyndromic deafness 57. Orthologous to human PDZD7 (PDZ domain containing 7).
pdzd7 Predicted to enable identical protein binding activity. Predicted to be involved in auditory receptor cell stereocilium organization and sensory perception of sound. Predicted to act upstream of or within auditory receptor cell development; detection of mechanical stimulus involved in sensory perception of sound; and establishment of protein localization. Located in cilium and nucleoplasm. Implicated in Usher syndrome type 2A; Usher syndrome type 2C; and autosomal recessive nonsyndromic deafness 57.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0042462 eye photoreceptor cell development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_05249220_05271562.mRNA False 5231 mRNA 0.48 18 5247210 5271562
TU804577 True 785 lncRNA 0.36 1 5246669 5247453

Neighbor

gene id symbol gene type direction distance location
CI01180000_05058846_05074279 CPXM1A coding downstream 172931 5058846 ~ 5074279 (-)
CI01180000_05041556_05041966 GRXCR1 coding downstream 205129 5041556 ~ 5042081 (-)
CI01180000_04998493_05007180 NA coding downstream 240030 4997811 ~ 5007180 (-)
CI01180000_04990672_04994457 NA coding downstream 252753 4990672 ~ 4994457 (-)
CI01180000_04982861_04987087 NA coding downstream 260123 4982728 ~ 4987087 (-)
CI01180000_05287164_05287414 NA coding upstream 15149 5286700 ~ 5287523 (-)
CI01180000_05290530_05291418 FAM213AA coding upstream 18936 5290498 ~ 5293458 (-)
CI01180000_05294164_05297149 NA coding upstream 22448 5294010 ~ 5297149 (-)
CI01180000_05320485_05336119 NA coding upstream 48513 5320075 ~ 5336119 (-)
CI01180000_05371182_05374133 NA coding upstream 99579 5371141 ~ 5374133 (-)
G683341 NA non-coding downstream 41960 5204950 ~ 5205250 (-)
G683339 NA non-coding downstream 44568 5202316 ~ 5202642 (-)
G683275 NA non-coding downstream 45554 5169882 ~ 5201656 (-)
G683268 NA non-coding downstream 104822 5142115 ~ 5142388 (-)
G683267 NA non-coding downstream 105400 5141515 ~ 5141810 (-)
G683303 NA non-coding upstream 11497 5283059 ~ 5286127 (-)
G683295 NA non-coding upstream 15138 5287953 ~ 5288093 (-)
G683380 NA non-coding upstream 220605 5492167 ~ 5492379 (-)
G683316 NA non-coding upstream 228054 5499616 ~ 5502145 (-)
G683327 NA non-coding upstream 297499 5569061 ~ 5573604 (-)
CI01180000_04796238_04797552 NA other downstream 449368 4796176 ~ 4797842 (-)
CI01180000_03242704_03242928 YPEL5 other downstream 2002253 3241341 ~ 3242929 (-)
CI01180000_03016426_03018342 NA other downstream 2227535 3014433 ~ 3018343 (-)
CI01180000_02988807_02995955 NA other downstream 2253346 2987081 ~ 2997401 (-)
G680506 NA other downstream 2395294 2771047 ~ 2851916 (-)
G683394 NA other upstream 346645 5618207 ~ 5619271 (-)
G683294 NA other upstream 479482 5751044 ~ 5755526 (-)
G683673 NA other upstream 1490513 6762075 ~ 6762844 (-)
G684018 NA other upstream 2131585 7403147 ~ 7413132 (-)
G684071 NA other upstream 2235328 7506890 ~ 7525654 (-)

Expression


Co-expression Network