CI01180000_04998493_05007180


Basic Information

Item Value
gene id CI01180000_04998493_05007180
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 4997811 ~ 5007180 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_04998493_05007180.mRNA
AGGCTATGGTCGATTTCATCAATGATAGACAGCAAAACCGCAGCTTCTTAGATGCTTTAAGTTTTGGTTATGGATTTGGTCCAGAACTGGACCACTTTGCAGCTCAGTTTACAGGGTATGAAGATTCATCTGATGAGGATTATTATGATTATGACGACGATAACGATAAGTATGGCGTCCGTACAAACAACAGATACTGTGGCTTTTCTCGCAACTTTCTTGATAGAGGCCTGCCAAAACCATCCAAACACGTAACACCCGAGGGACAGAAAGAGAGACGTCGGCTGGAAAAATTAGAGAAGGAGAATGCAGATAAAGAAAAAAATAAACCGGAGCTTGATATGAATAGCTGCTTCGTGTCAAACGCAGCTGCTATCGCCAAGCGCAAACTAGAACAAAAACCCAAACCTGACAAGAAACCTCAAGCAAACTCAAGAAAACAGCGTGGGTCAGAGGAGAAAGGCACCACTACGCCACAAAAACAGGTTGATAAGGAGGAGGTGAAGTCAGAGGAGACTGTCAATGCAAATTATTTTATTACAAGAAGTGTGGAGATGGCAGGTATGGGTAACCAGTATGCCGCCTCAGGAAACCTGGAGATGGCTGTGAAATATTTTACAGATGCTATAAAAAACAACCCTAAAGAATATAAGTTGTTTGGAAATCGTTCTTACTGCTATGAAAAGATGTTTGAATATGAGAAAGCTTTAACCGATGCTGATATTGCTCTTTCTATGAACCCCAAATGGATTAAAGGGCTTTACAGAAAAGGCAAAGCGCTGGTTGGGCTGAAGGGATATTATGAAGCCAGACTTACATATGGTGAAGTGTTAAAACTGGACAGCACATGTAAGGATGCAGCTGAGGAGATGATGAGGGTGCAGCTCATGCAGCTTATGGAAATGGGATTCACCAAAGAGCAGAGTTCAAATGCCCTTATTCTTCATGGAACTGTAGAAAAAGCCTTAGAAAGTCTCTCTGGGCTATCAGGTTTAGTCCCTGTCCTAGTTCCCAGAGAAAGTGAGTTTATGACTGTAGAGCGTCACCCACAACCTCCAGCTAAATTCCCTCTCAGACCTCTTCCTCAGAATCAGCATCAACCCAGTATGCCAGCCGCTGCTCCAGTTCACCGTCATGCCCCGGAGCTATTCCCTATCTGGGTCGGAGATCTGGTGCCTTCTATAACAGAGGCTAAACTTTATAAGTTATTCAGCTTGGTTGGACAAGTCCATAGTGTAAGAGTGTTACAAATGAGACATTGTGCATTTGTTAACTACACCAACAAGGAGGACTGTGAGAAAGCCATACAAGACTTCAATGGTTATGCCATTGATGGGACAACTCTAGTGGTGCGCTATCCTGATAGGATTCACACACGTCTTGGAGTGTCCAGAGATGCATCTACAGAGTCACCAGGGAAGACCGAGAAACAACCTGATGAATGTTATTTTTGGAGGACAACTGGCTGCTTAAAGAATGACCGCTGCACTTACAAGCATATTCCAGAAAACAAGGGCGTTGACCGCCATAAAGCCAAATCACACCCCTGATTCACAGCACACCGACAGAGGGATTTAAACCTCTCAAAATCAGTGTAATTAGTTACAGATACAGTAAAAATTTCACATGCATAAAACAATATGGGGCTATCGTGTTTGGTCATTTATCTGGATATTTCATCATTTTTGTCTACAAATAGTTCAAGTCTTACTATCAGTCTATACACAAGTTAAAGAGAGTTTGGACAAACGGGTATGATGGCTGTGATTTAATCAACTTATTTTGTCCCACAAAATAGTATGTTCCCTTTTACTAAGTCAGTTATTGGTTTTAATGTTTTGCAAGACAGTGGCGTGAAGCTTTATATTATTTTTAAGGCTGTCCAAAGTTTAATACATGGTCACTGCAAATATCTTTTTTTTTTTTTTTTTAAACTATTGGGAAAAATATTTGCCTTATTATGACCCTGTCTGAGGGTTTCAAACCATAAGTGTTGTCTGTCTCTGAGAGTTTTTATTTGGACTGATTCTAACCTGCAGGTTTTTACCTGCTTCTGTAAAAGTTGAAATGTGTCGAATTCAAATCTCTCCACGTCACGTCTGTTATAACAACTATTTGGCGTAAATAGTATTATATCATAAATCTTGATGAGGAAAAGTTTGCATTAAGTTGTAATTGATTACCAGTGATATACCTGTAAAGCAATGCAAAATTACTCTCTAATACAATAAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_04998493_05007180.mRNA True 2233 mRNA 0.40 14 4997811 5007180

Neighbor

gene id symbol gene type direction distance location
CI01180000_04990672_04994457 NA coding downstream 3354 4990672 ~ 4994457 (-)
CI01180000_04982861_04987087 NA coding downstream 10724 4982728 ~ 4987087 (-)
CI01180000_04978607_04980946 NA coding downstream 16865 4978568 ~ 4980946 (-)
CI01180000_04970618_04977149 NA coding downstream 20662 4970220 ~ 4977149 (-)
CI01180000_04885766_04904637 RAB11FIP5A, RAB11FIP5 coding downstream 92429 4884939 ~ 4905382 (-)
CI01180000_05041556_05041966 GRXCR1 coding upstream 34376 5041556 ~ 5042081 (-)
CI01180000_05058846_05074279 CPXM1A coding upstream 51666 5058846 ~ 5074279 (-)
CI01180000_05249220_05271562 PDZD7, PDZD7A coding upstream 240030 5246669 ~ 5271562 (-)
CI01180000_05287164_05287414 NA coding upstream 279531 5286700 ~ 5287523 (-)
CI01180000_05290530_05291418 FAM213AA coding upstream 283318 5290498 ~ 5293458 (-)
G683183 NA non-coding downstream 32311 4965040 ~ 4965500 (-)
G683182 NA non-coding downstream 36886 4959202 ~ 4960925 (-)
G683184 NA non-coding downstream 139637 4856183 ~ 4858174 (-)
G683203 NA non-coding downstream 156123 4841475 ~ 4841688 (-)
G683140 NA non-coding downstream 254011 4743483 ~ 4743800 (-)
G683162 NA non-coding upstream 49092 5056272 ~ 5058160 (-)
G683267 NA non-coding upstream 134335 5141515 ~ 5141810 (-)
G683268 NA non-coding upstream 134935 5142115 ~ 5142388 (-)
G683275 NA non-coding upstream 162702 5169882 ~ 5201656 (-)
G683339 NA non-coding upstream 195136 5202316 ~ 5202642 (-)
CI01180000_04796238_04797552 NA other downstream 199969 4796176 ~ 4797842 (-)
CI01180000_03242704_03242928 YPEL5 other downstream 1752854 3241341 ~ 3242929 (-)
CI01180000_03016426_03018342 NA other downstream 1978136 3014433 ~ 3018343 (-)
CI01180000_02988807_02995955 NA other downstream 2003947 2987081 ~ 2997401 (-)
G680506 NA other downstream 2145895 2771047 ~ 2851916 (-)
G683394 NA other upstream 611027 5618207 ~ 5619271 (-)
G683294 NA other upstream 743864 5751044 ~ 5755526 (-)
G683673 NA other upstream 1754895 6762075 ~ 6762844 (-)
G684018 NA other upstream 2395967 7403147 ~ 7413132 (-)
G684071 NA other upstream 2499710 7506890 ~ 7525654 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location