CI01180000_06183820_06187700


Basic Information

Item Value
gene id CI01180000_06183820_06187700
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 6182149 ~ 6187901 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_06183820_06187700.mRNA
TGTATAAATAACTGCATGCCTTTATTTATACCCATCATCATCCTTAATTTGTTTTGAGCATAATAACTTCTGAGTGTAATTTCATGTGAAAACTCTCAAGCGTGTGGATGTTTACCTGTAAAATGTTTTATTAGTTCCATTGACAGGTAAATCCCAAATAATGGCATTTTCATCTCATACTGATTCAATGTTAAAACATGAAAATATCAGCAAAGGAATCTTTTTTTTTCCTAGCCTTCCAATTTTTGACAAATTAATCCATTGAAGTAATTGAAAATGATAAGATGTCAACTAATAATTTAATCTATTTATTTAAATGTAGATTATAAATATATACAGAGTTGACTCATAACATTTATTTCCCCCTTTTTTATGTAACAAACATTTTAATATATTTTAAAATTGACATGAATGTATAAGGAACAGTGCTGTAACTTTTCACCATTTAAAAAGGTTCTTCACCAAATTACATTCTAGTCCTGTTTTGTTCCAGTTCATTTTATGGTCCAGTGGTGTGATGACAATGTTATCTACTCCAAAACTATTATTAACATTATGGATTTATGAAATGAAAAATCTATTGAGTGTGAACATAAAATGACCAAAATGCTGTTTACAATGAAATACTTTTGGAAAGTTGATGTGTTATACTTCGTGTCAATGACCCATATTTGAGATCAGACTGGAAAAATCTACCATTTCATCTGAAAATATGTGCCTGAAGTGAAATAATAGTTCTTCGAGACTTCTTTTTCAATAATCCGGGAGACCATTGACTTTTGTGTGCATGTTCAATCTTAGTCTTCTTGTCTGATAAAAAGTAAATCAAGATTAGTGAGTTTAAGTGTGCTCTATTAACACTAAGCAATTAGGCAGCTCCCAAGCGAGAGCGCTTAATGCCGTGCGATTTCAGCTATCTGATCGCACACATTTGCACAGACCACCAGTCGACTCCACCAGCTCAGCATTGCAGTAACCAGCAGGGCACAGGGGGATGAATCCCAGCTGACAAAATGGATGTGTCAATTGGATGAGGCTTACACAAATCTCACCACAGGGCCAGGGAGTGACGCGCTAAAACAAATTAAAAGCGCGAACCGAGAGCATATTTTATGCTAGCGATTTATGATGTAGATGATCCTCCCCTCGCTCCTGTTCCCTTAATGATAAATCATCATCTTCCAGAAGAATGGATGGAGAAGGAAATCAAAATGTCAGTAAGAGAAAGCAAAAATGGCAAATGCGCCGTGCTTTTGTTGTTCCTCTTAAATTCTGTTAATCGCCTCAGGTAAAGATTAACTGCTGCTGCCAATTTAATTCAGCTTCAAATAATGCAACAAGGTCACTGTTTTCCTTTCGCTCTTCTCTCTCGTGTCTCTCTCTCTCTCTCTCTCTAGTGCAGGATTGAGTTGTCATGTAGCTCTAATAGGCAGCACAGGGAATCATTAGTCCGGCTCAGCTCTCTGACTGATGGGCATTTCACTCCAATCATCTGGCCGTGCTCAGACGGCGCGGCACTATTGACACGGTGTCAGAGCTGAGAGAGGATGGCTTAATCAGCCGGGACACTCTCAGCATTGATTTGACAAGCTGCCGTAATGACCTTCTTGTTTTTGTAAAGGATCACTGTTTATCTGAGCTGGCACTGATGCACTGAGCATGCTGCATCGTCATGGAAACTATTATCACGGCCAAGCCGGGGCCTTGGAGGGCTCCTAAAGATGATGTCGGATGTGACTCGAGGGGGGTCGCCGTGGATGGGGCCCATGTGTCAGACAGTAAATATTACTGGCGTACTGACAGGCCTGGAGCCGTGACTCACCGTGTAAAATCGTTAATAAGCAGCATGATGGGGCCACTACATCCCAAGGATTGCTACCTGAGTATGCGTTTTGAAACAAAGAAAAAGGTCTGTAAACAAACAACCGGTTTTGACATTTTCAAACAATATGTGATTGTAATGGATTGAAATGCTGATGACAAAATGGAATGTAAAAACCTGATGGTTAATAATCCTCAAAAAGAAAGAGCTAGTTTGCTTTCTGCTTCCCTCAACGTGCATCTACACTTTCTCATCAAATGAAACCTGCTGTCATTACCGCGCCATCTGCCTTTGTAATGTAGTTTCATTACAGGAAAAGGACCTTACATAGAAGAAAAAAAAAGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_06183820_06187700.mRNA True 2169 mRNA 0.39 3 6182149 6187901

Neighbor

gene id symbol gene type direction distance location
CI01180000_06060886_06073483 NA coding upstream 107927 6059381 ~ 6074222 (+)
CI01180000_05928275_05933064 NA coding upstream 248897 5927492 ~ 5945665 (+)
CI01180000_05919195_05919836 NA coding upstream 261702 5918105 ~ 5920447 (+)
CI01180000_05875768_05878028 NA coding upstream 303430 5875069 ~ 5878719 (+)
CI01180000_05752328_05757955 VDAC2, VDAC2.L coding upstream 424013 5751556 ~ 5758136 (+)
CI01180000_06369051_06375352 NA coding downstream 180480 6368381 ~ 6377253 (+)
CI01180000_06503211_06517041 NA coding downstream 315310 6503211 ~ 6517102 (+)
CI01180000_06532667_06556697 VWC2 coding downstream 344375 6532276 ~ 6557504 (+)
CI01180000_06581704_06589445 NA coding downstream 393089 6580990 ~ 6589481 (+)
CI01180000_06608734_06626459 IKAROS, IKZF1 coding downstream 420833 6608734 ~ 6626812 (+)
G681506 NA non-coding upstream 2228 6179672 ~ 6179921 (+)
G681459 NA non-coding upstream 335267 5846662 ~ 5846882 (+)
G681451 NA non-coding upstream 351058 5830647 ~ 5831091 (+)
G681440 NA non-coding upstream 379226 5802712 ~ 5802923 (+)
G681521 NA non-coding downstream 19191 6207092 ~ 6208009 (+)
G681537 NA non-coding downstream 70908 6258809 ~ 6262932 (+)
G681540 NA non-coding downstream 82249 6270150 ~ 6383813 (+)
G681606 NA non-coding downstream 209617 6397518 ~ 6403932 (+)
G681591 NA non-coding downstream 254402 6442303 ~ 6467224 (+)
G681268 NA other upstream 808387 5370410 ~ 5373762 (+)
G681137 NA other upstream 1396518 4783305 ~ 4785631 (+)
G680736 NA other upstream 2397708 3765691 ~ 3784441 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other upstream 2609752 3569165 ~ 3573135 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 3486713 2689271 ~ 2693221 (+)
G681592 NA other downstream 285134 6471995 ~ 6478999 (+)
G681686 NA other downstream 445007 6632908 ~ 6634989 (+)
G681667 NA other downstream 467945 6655846 ~ 6659546 (+)
CI01180000_07403482_07412752 HELLS other downstream 1215246 7403482 ~ 7413190 (+)
CI01180000_07694615_07695428 MRPL14 other downstream 1475522 7694529 ~ 7695667 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G89631 LOC107698159,LOC107747466 misc NC_056711.1 CM032080.1 380964 ~ 677601 (+)