G678633


Basic Information

Item Value
gene id G678633
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 777607 ~ 779619 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU799290
GATGAACGAAGGTCTTACGGGTGTGGAACGACATGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTTTAGTGAACCAACCCTTTAATATGAAACCATTATTATATGAAAACTCATTTTTTTTGCTTACAATAATAAGTTTATAGGAAAAAATGTGCTTGGTTGTTATGAAAATGTTAAATGCGTAAATTTTTTTAAATGAAGAATATTATTTCTTATTTGATTTTCTTGTTTCGGGGTGCACTATGACCTGAACATGTGACATGTTTCATGAGATTTACCCTATAAGTTAAAAACAATGAAATGTCTGACTGACTGGAATCAAATCCTGATCTGGAATATCAACACAGGATCAAGCATCACCGGGAGGATTAATAAACACAAAACCGCCCTAAATGTCCTCTGAATTGACTCTGAATAAATAGTACACATTTTCCCATCATCCTCGTTTATTTCGTTTGCGCCTCTCTTCGGTCTCCGCGATCTGTTTGGATCAGTTTTTTGTGTGCGAACTGAAACCGGCCTTTCATGGCAGAGCTTGCTGTTTGATTCCCTCTGTCCAGACCCTATGCAAAAACAACGGAAGCCGTGTAGCTCTATATTTCCTCTATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCCATCCGTTGCGTGTTTTAACGCAGTCAGCAGACTTTGGGAGGTTCAAGACTGTGGGTGTAGATGTACAGATGCATGAAACCTGTCAAGAGAAGGTCATATTTCACCTCAAAATCAAAGCAAAAATAGGAAATAATGTATTTTTTTCTTGACAATTTAAGCACATTTTCCCCTCCAAATGACTGATGTCAGCATGCCACATTGAGCCAGCAGAGAATTCTGGGGGAAAAAGGCACATAATGAAATGCCTTTTAATATCTCATTTATTTTCACTACTGTAATGTGAAAACAAAAATGTATATATTATGTAAATTGTAAAGTATTTATACTTCTTCATGGTAGTATTTGTTGTATTGCCTCTAATTTATGCTGATTTTAATTTAATATTACAGTATTTGTTACCATAATACAGTTAAAAAATGTTTTGAGGAATGAGAAACGACACAAATAATTAACATCTGAATTCATTACAGTAATGGGATCTGCTTCATTTTGTTTTTGTGCAATATTGTGCATTTTCTTTCTTTTTTTAAAATAATATTTTTTGGGGTGAAATATGATCCGCACGTTTTCATGAGAAACTACTGCCACATTTACAAAAACAAAACATGTTAGCACAGGTACATGAAAGCAGATGTTTTAAATATTCATATTTATTCATGCTGTATGTTTGTAGAGGCAGTATGCATCTATGCCATGGATACAGCAGCCAGAATCCAAGTATGCTCCGCGTTTGTTGTTTTGCCTCGTTTGACCCTCTGAAATTAGTGCTCTAAAAAACTCAACCGAACCAGAATCCCAGCAGCTCATTTGAAATGCATGACCTGTGCCAAAACATGTAAATCACTGCCTCAAAGACACCTAGACGAGTTCATTAAGACGCCACAATTGAAAATGAAGAACAAAAGGGTCACGTTTAATGAGCTATTGAATTGTTCATTTAATTTGGAGCCCATGTTTTGTTGTCTTTCTGTAGCAAACAACATCAGTGTGACTGTCTACAAGACCTGTTTGTGTTCCTCGTGCCAAAATATCAAAGAATGATTTAATCACTGCCAAGACTGGTTTACTAACCCTTTCTCTTTTTTCTTGATTTTTGTGCATCAGGTTATGAAGTATTGAATATTAACCAATAAAACTGCCAAGTACCTGTGAGGGCGAATCTCACCAAACATGTCCAGAACATTTTTCTTGATTTCACCTCAAAATCAAAATGTAGAAATTTAAGAAATTATATTTTACTTACAGACAATTAAACCTATTTTATGATTATCAATATAGTTTGTTTTCTTGTGCATTTCGGCAATATTTCCATGCACATTTTCCCCTGGA
>TU799292
GATGAACGAAGGTCTTACGGGTGTGGAACGACATGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTTTAGTGAACCAACCCTTTAATATGAAACCATTATTATATGAAAACTCATTTTTTTTGCTTACAATAATAAGTTTATAGGAAAAAATGTGCTTGGTTGTTATGAAAATGTTAAATGCGTAAATTTTTTTAAATGAAGAATATTATTTCTTATTTGATTTTCTTGTTTCGGGGTGCACTATGACCTGAACATGTGACATGTTTCATGAGATTTACCCTATAAGTTAAAAACAATGAAATGTCTGACTGACTGGAATCAAATCCTGATCTGGAATATCAACACAGGATCAAGCATCACCGGGAGGATTAATAAACACAAAACCGCCCTAAATGTCCTCTGAATTGACTCTGAATAAATAGTACACATTTTCCCATCATCCTCGTTTATTTCGTTTGCGCCTCTCTTCGGTCTCCGCGATCTGTTTGGATCAGTTTTTTGTGTGCGAACTGAAACCGGCCTTTCATGGCAGAGCTTGCTGTTTGATTCCCTCTGTCCAGACCCTATGCAAAAACAACGGAAGCCGTGTAGCTCTATATTTCCTCTATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCCATCCGTTGCGTGTTTTAACGCAGTCAGCAGACTTTGGGAGGTTCAAGACTGTGGGTGTAGATGTACAGATGCATGAAACCTGTCAAGAGAAGGTCATATTTCACCTCAAAATCAAAGCAAAAATAGGAAATAATGTATTTTTTTCTTGACAATTTAAGCACATTTTCCCCTCCAAATGACTGATGTCAGCATGCCACATTGAGCCAGCAGAGAATTCTGGGGGAAAAAGGCACATAATGAAATGCCTTTTAATATCTCATTTATTTTCACTACTGTAATGTGAAAACAAAAATGTATATATTATGTAAATTGTAAAGTATTTATACTTCTTCATGGTAGTATTTGTTGTATTGCCTCTAATTTATGCTGATTTTAATTTAATATTACAGTATTTGTTACCATAATACAGTTAAAAAATGTTTTGAGGAATGAGAAACGACACAAATAATTAACATCTGAATTCATTACAGTAATGGGATCTGCTTCATTTTGTTTTTGTGCAATATTGTGCATTTTCTTTCTTTTTTTAAAATAATATTTTTTGGGGTGAAATATGATCCGCACGTTTTCATGAGAAACTACTGCCACATTTACAAAAACAAAACATGTTAGCACAGGTACATGAAAGCAGATGTTTTAAATATTCATATTTATTCATGCTGTATGTTTGTAGAGGCAGTATGCATCTATGCCATGGATACAGCAGCCAGAATCCAAGTATGCTCCGCGTTTGTTGTTTTGCCTCGTTTGACCCTCTGAAATTAGTGCTCTAAAAAACTCAACCGAACCAGAATCCCAGCAGCTCATTTGAAATGCATGACCTGTGCCAAAACATGTAAATCACTGCCTCAAAGACACCTAGACGAGTTCATTAAGACGCCACAATTGAAAATGAAGAACAAAAGGGTCACGTTTAATGAGCTATTGAATTGTTCATTTAATTTGGAGCCCATGTTTTGTTGTCTTTCTGTAGCAAACAACATCAGTGTGACTGTCTACAAGACCTGTTTGTGTTCCTCGTGCCAAAATATCAAAGAATGATTTAATCACTGCCAAGACTGGTTTACTAACCCTTTCTCTTTTTTCTTGATTTTTGTGCATCAGGTTATGAAGTATTGAATATTAACCAATAAAACTGCCAAGTACCTGTGAGGGCGAATCTCACCAAACATGTCCAGAACATTTTTCTTGATTTCACCTCAAAATCAAAATGTAGAAATTTAAGAAATTATATTTTACTTACAGACAATTAAACCTATTTTATGATTATCAATATAGTTTGTTTTCTTGTGCATTTCGGCAATATTTCCATGCACATTTTCCCCTGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU799290 False 1987 lncRNA 0.35 2 777607 779619
TU799292 True 1985 lncRNA 0.35 2 777607 779619

Neighbor

gene id symbol gene type direction distance location
CI01180000_00765917_00776252 NA coding upstream 696 765797 ~ 776911 (+)
CI01180000_00737754_00743866 NA coding upstream 33396 735310 ~ 744211 (+)
CI01180000_00661446_00671602 MSH6 coding upstream 105419 661109 ~ 672188 (+)
CI01180000_00427700_00437883 NA coding upstream 339141 427650 ~ 438466 (+)
CI01180000_00368639_00375465 ZC3H6 coding upstream 401360 368639 ~ 376247 (+)
CI01180000_00812535_00858607 NA coding downstream 32238 811857 ~ 859005 (+)
CI01180000_00862066_00867985 NA coding downstream 81127 860746 ~ 868112 (+)
CI01180000_00947514_00949868 NA coding downstream 166802 946421 ~ 950906 (+)
CI01180000_00955725_01050852 SIPA1L2 coding downstream 175303 954922 ~ 1051826 (+)
CI01180000_01196818_01224406 EGLN1B, EGLN1, EGLN1A coding downstream 417167 1196786 ~ 1224915 (+)
G678640 NA non-coding upstream 603 747265 ~ 777004 (+)
G678712 NA non-coding upstream 55150 722123 ~ 722457 (+)
G678654 NA non-coding upstream 62761 714434 ~ 714846 (+)
G678703 NA non-coding upstream 78553 698675 ~ 699054 (+)
G678632 NA non-coding upstream 92564 677874 ~ 685043 (+)
G678629 NA non-coding downstream 175 779794 ~ 780590 (+)
G678717 NA non-coding downstream 4296 783915 ~ 784202 (+)
G678720 NA non-coding downstream 6742 786361 ~ 786662 (+)
G678653 NA non-coding downstream 19070 798689 ~ 798938 (+)
G678660 NA non-coding downstream 23332 802951 ~ 803490 (+)
G678440 NA other upstream 625955 147934 ~ 151652 (+)
G678751 NA other downstream 280224 1059843 ~ 1066091 (+)
G678637 NA other downstream 369932 1149551 ~ 1155672 (+)
G678946 NA other downstream 738734 1518353 ~ 1612547 (+)
G679076 NA other downstream 1015551 1795170 ~ 1799433 (+)
G679324 NA other downstream 1609248 2388867 ~ 2397360 (+)

Expression


Co-expression Network