Gene
RNA
| Item | Value |
|---|---|
| gene id | G679047 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01180000 |
| NCBI id | null |
| chromosome length | 11503085 |
| location | 2238490 ~ 2241873 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU799735 | True | 1255 | lncRNA | 0.48 | 3 | 2238490 | 2241873 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01180000_02158036_02158965 | HS3ST1L1 | coding | upstream | 79268 | 2157350 ~ 2159222 (+) |
| CI01180000_01942458_01949580 | NA | coding | upstream | 287843 | 1942127 ~ 1950647 (+) |
| CI01180000_01915282_01926129 | NA | coding | upstream | 312221 | 1914892 ~ 1926269 (+) |
| CI01180000_01865632_01870994 | NA | coding | upstream | 367401 | 1865509 ~ 1871089 (+) |
| CI01180000_01832263_01834405 | COX5B.2, COX5B2, COX5B | coding | upstream | 403491 | 1832013 ~ 1834999 (+) |
| CI01180000_02322594_02323609 | NA | coding | downstream | 78479 | 2320352 ~ 2323752 (+) |
| CI01180000_02362001_02362428 | NA | coding | downstream | 120087 | 2361960 ~ 2363530 (+) |
| CI01180000_02541296_02567509 | CFAP46 | coding | downstream | 299423 | 2541296 ~ 2567783 (+) |
| CI01180000_02574027_02588521 | NA | coding | downstream | 332154 | 2574027 ~ 2588824 (+) |
| CI01180000_02613130_02639905 | NA | coding | downstream | 370405 | 2612278 ~ 2639922 (+) |
| G679218 | NA | non-coding | upstream | 23556 | 2210789 ~ 2214934 (+) |
| G679228 | NA | non-coding | upstream | 37055 | 2197189 ~ 2201435 (+) |
| G679050 | NA | non-coding | upstream | 110503 | 2121269 ~ 2127987 (+) |
| G679204 | NA | non-coding | upstream | 132397 | 2099698 ~ 2106093 (+) |
| G679202 | NA | non-coding | upstream | 139682 | 2098541 ~ 2098808 (+) |
| G679346 | NA | non-coding | downstream | 200402 | 2442275 ~ 2442571 (+) |
| G680148 | NA | non-coding | downstream | 330539 | 2572412 ~ 2572739 (+) |
| G680180 | NA | non-coding | downstream | 393902 | 2635775 ~ 2664245 (+) |
| G680204 | NA | non-coding | downstream | 441361 | 2683234 ~ 2683580 (+) |
| CI01180000_02690045_02691641 | NKX6-2, NKX6-2.L, NKX6.2 | non-coding | downstream | 451624 | 2689271 ~ 2693221 (+) |
| G679076 | NA | other | upstream | 439057 | 1795170 ~ 1799433 (+) |
| G678946 | NA | other | upstream | 682339 | 1518353 ~ 1612547 (+) |
| G678637 | NA | other | upstream | 1082818 | 1149551 ~ 1155672 (+) |
| G678751 | NA | other | upstream | 1172399 | 1059843 ~ 1066091 (+) |
| G678440 | NA | other | upstream | 2086838 | 147934 ~ 151652 (+) |
| G679324 | NA | other | downstream | 146994 | 2388867 ~ 2397360 (+) |
| CI01180000_03571292_03571611 | GNG2.L, GBG2, GNG2 | other | downstream | 1311404 | 3569165 ~ 3573135 (+) |
| G680736 | NA | other | downstream | 1523818 | 3765691 ~ 3784441 (+) |
| G681137 | NA | other | downstream | 2541432 | 4783305 ~ 4785631 (+) |
