G680308


Basic Information

Item Value
gene id G680308
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2902448 ~ 2902669 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU801147
AAGTGTGCAACTCTCATTTGATGAATTCACATACTGATTTGCGGATGAGCAAAATTTGTCCGTGACTTCACATTTTTTGATGCGGGTGTGTGAACACGTTTTGCACCATATTCACTGCGTCAACTGTAGCAAAAATGTGAGCGTACGAGTTTCTTAATTTGTGTTTTGTAGAATAGGATTTCTGCACCTGCAATGAAGAATTTAAGAAGGTGTAACTGTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU801147 True 222 lncRNA 0.38 1 2902448 2902669

Neighbor

gene id symbol gene type direction distance location
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 coding upstream 210265 2689271 ~ 2693221 (+)
CI01180000_02613130_02639905 NA coding upstream 262526 2612278 ~ 2639922 (+)
CI01180000_02574027_02588521 NA coding upstream 313624 2574027 ~ 2588824 (+)
CI01180000_02541296_02567509 CFAP46 coding upstream 334665 2541296 ~ 2567783 (+)
CI01180000_02362001_02362428 NA coding upstream 538918 2361960 ~ 2363530 (+)
CI01180000_02951792_02968343 STK32C coding downstream 49123 2951792 ~ 2968343 (+)
CI01180000_02998131_03010201 NA coding downstream 95462 2998131 ~ 3010503 (+)
CI01180000_03077007_03078238 NA coding downstream 173938 3076607 ~ 3078799 (+)
CI01180000_03149731_03154047 NA coding downstream 246378 3149047 ~ 3154088 (+)
CI01180000_03210894_03214195 LBH coding downstream 308225 3210894 ~ 3214720 (+)
G680306 NA non-coding upstream 6515 2895526 ~ 2895933 (+)
G680304 NA non-coding upstream 9009 2893159 ~ 2893439 (+)
G680303 NA non-coding upstream 12157 2889855 ~ 2890291 (+)
G680219 NA non-coding upstream 12818 2877311 ~ 2889630 (+)
G680296 NA non-coding upstream 44137 2857324 ~ 2858311 (+)
G680309 NA non-coding downstream 1172 2903841 ~ 2904164 (+)
G680349 NA non-coding downstream 64289 2966958 ~ 2967757 (+)
G680331 NA non-coding downstream 148880 3051549 ~ 3052025 (+)
G680317 NA non-coding downstream 221122 3123791 ~ 3179566 (+)
G680424 NA non-coding downstream 262819 3165488 ~ 3169456 (+)
G679324 NA other upstream 505088 2388867 ~ 2397360 (+)
G679076 NA other upstream 1103015 1795170 ~ 1799433 (+)
G678946 NA other upstream 1346297 1518353 ~ 1612547 (+)
G678637 NA other upstream 1746776 1149551 ~ 1155672 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 650608 3569165 ~ 3573135 (+)
G680736 NA other downstream 863022 3765691 ~ 3784441 (+)
G681137 NA other downstream 1880636 4783305 ~ 4785631 (+)
G681268 NA other downstream 2467741 5370410 ~ 5373762 (+)
G681592 NA other downstream 3570366 6471995 ~ 6478999 (+)

Expression


Co-expression Network