G680768


Basic Information

Item Value
gene id G680768
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3843859 ~ 3844579 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU801685
TTTCTCATCGTTCATGATAACAAAACGAAACCTTATTTTAAAGTGTTACCATTTACTTTGATGGCTTGTTCTGTTGTTGCTGGGTGATCTTTTTGCATTTGGTATCTTTACCACGTGGCTTTAATGGGGTTTCAACATTTGATCACTGAACAGAGAGATGCTTTAATAGTCGAACAAACAACGTGGGAGGGTCCCAGACAAAATCAAACTTGACAACTACAAAACCCATTTTGTGATGGCCATAAAAGACTATTCTGGTTTATTTAATGGCTGCGATCCAGGGTCACTAATAATGATACAAGATGTCAATAGTTTTTAGTATCATTTTGATGTCTTCTGGATGTTTGTGTGGTACTGGCCAGCAGGATAATGAGATGCCAGTCTGATGGGCTGTTTGAGCTTCCTCACTTCACACCTCTAGCATCTCTAATGAGAGACCCTTGAATCAGTCTTAGTGACCCTCACAAAACTCTAATGAGGAGCACGCAGTTTGTTCACCAATTACCGGTCTGAAGCAGATGTAGTTATGCAGTGTTGAAATCTTAATTTAGATGTCTGTTTTTCATGTAGTCTGAATACTTGTTATGTGCGCATATACATACTCTGAGATGAAAGCCAGGTCTTTGAAAATGGAGGACTCTTATGAAGAAAAAGCTAATAACAATCAGACCTCTGAACTGAGATGAGACGAAGATGGGCAGTGAGGGTATTATACAACCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU801685 True 721 lncRNA 0.39 1 3843859 3844579

Neighbor

gene id symbol gene type direction distance location
CI01180000_03835051_03839911 EIF4E, EIF4EA, EIF4EB coding upstream 3120 3834488 ~ 3840739 (+)
CI01180000_03798341_03812950 METAP1, AMPM1 coding upstream 30808 3797774 ~ 3813051 (+)
CI01180000_03757478_03765413 RRH coding upstream 78193 3755690 ~ 3765666 (+)
CI01180000_03741295_03752345 DAPP1 coding upstream 91219 3740496 ~ 3752640 (+)
CI01180000_03701881_03732121 ATP10D coding upstream 111736 3701469 ~ 3732123 (+)
CI01180000_03874309_03876138 LINGO2B, LINGO2 coding downstream 29632 3874211 ~ 3876824 (+)
CI01180000_03886676_03894240 C22H9ORF72, CLG15H9ORF72, CSGR16H9ORF72, C3H9ORF72, CUNH9ORF72, C1H9ORF72, CLG4H9ORF72 coding downstream 41282 3885861 ~ 3894614 (+)
CI01180000_03906328_03978950 KIAA1109 coding downstream 61749 3906328 ~ 3979848 (+)
CI01180000_04010876_04029709 LETM1 coding downstream 166297 4010876 ~ 4030106 (+)
CI01180000_04249587_04251719 FOXI2 coding downstream 404873 4249452 ~ 4252451 (+)
G680728 NA non-coding upstream 13303 3828332 ~ 3830556 (+)
G680721 NA non-coding upstream 18016 3674292 ~ 3825843 (+)
G680831 NA non-coding upstream 190843 3652738 ~ 3653016 (+)
G680825 NA non-coding upstream 201753 3641887 ~ 3642106 (+)
G680824 NA non-coding upstream 202104 3641460 ~ 3641755 (+)
G680856 NA non-coding downstream 23482 3868061 ~ 3868454 (+)
G680864 NA non-coding downstream 37689 3882268 ~ 3882606 (+)
G680869 NA non-coding downstream 136432 3981011 ~ 3981251 (+)
G680879 NA non-coding downstream 217586 4062165 ~ 4062472 (+)
G680882 NA non-coding downstream 219882 4064461 ~ 4064828 (+)
G680736 NA other upstream 59418 3765691 ~ 3784441 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other upstream 271462 3569165 ~ 3573135 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 1148423 2689271 ~ 2693221 (+)
G679324 NA other upstream 1446499 2388867 ~ 2397360 (+)
G679076 NA other upstream 2044426 1795170 ~ 1799433 (+)
G681137 NA other downstream 938726 4783305 ~ 4785631 (+)
G681268 NA other downstream 1525831 5370410 ~ 5373762 (+)
G681592 NA other downstream 2628456 6471995 ~ 6478999 (+)
G681686 NA other downstream 2788329 6632908 ~ 6634989 (+)
G681667 NA other downstream 2811267 6655846 ~ 6659546 (+)

Expression


Co-expression Network